当前解析结果
SmilChr05G000754| 统一新 Gene ID | SmilChr05G000754 |
|---|---|
| 名称 | SmilChr05G000754 |
| 描述 | homeobox-DDT domain protein RLT1-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 5832012 - 5842242 / + |
| NCBI Gene ID | LOC130985467 |
|---|---|
| GeneID | 130985467 |
| locus_tag | - |
| NCBI Name | LOC130985467 |
| 原始查询 | SmilChr05G000754 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | homeobox-DDT domain protein RLT1-like |
| 产物 | homeobox-DDT domain protein RLT1-like |
| Arabidopsis | AT5G44180 (RLT2)Homeodomain-like transcriptional regulator [Source:NCBI gene (formerly Entrezgene);Acc:834441] identity=47.3; qcov=0.91; evalue=0; confidence=high |
| Rice | Os05g0562400- identity=66.5; qcov=0.274; evalue=0; confidence=weak |
| GO | GO:0003677 (DNA binding); GO:0006357 (regulation of transcription by RNA polymerase II) |
| KEGG | - |
| Pfam | PF00046 (Homeodomain); PF02791 (DDT); PF05066 (HARE-HTH); PF15612 (WHIM1); PF15613 (WSD); PF31066 (DUF8799) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985467 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057764437.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057764437.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057764437.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057764437.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057764437.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:5832716 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B79 |
Chr5:5833377 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
Chr5:5834342 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A16,B111,C59 |
Chr5:5834345 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr5:5835127 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A22,B111 |
Chr5:5835171 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr5:5835211 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A15,B17 |
Chr5:5836475 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B79 |
Chr5:5837218 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr5:5837781 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr5:5837784 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C26 |
Chr5:5837863 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764437.1PF00046
Homeodomain 23-79 aa
PF02791
DDT 504-559 aa
PF05066
HARE-HTH 685-752 aa
PF15612
WHIM1 864-908 aa
PF15613
WSD 1028-1101 aa
PF31066
DUF8799 1255-1318 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764437.1 |
Pfam | PF00046 |
Homeodomain | Domain | 23 | 79 | 5.1e-17 | 62.2 | Homeodomain |
XP_057764437.1 |
Pfam | PF02791 |
DDT | Family | 504 | 559 | 3.2e-20 | 72.7 | DDT domain |
XP_057764437.1 |
Pfam | PF05066 |
HARE-HTH | Family | 685 | 752 | 1e-16 | 61.8 | HB1, ASXL, restriction endonuclease HTH domain |
XP_057764437.1 |
Pfam | PF15612 |
WHIM1 | Motif | 864 | 908 | 9.9e-10 | 38.5 | WSTF, HB1, Itc1p, MBD9 motif 1 |
XP_057764437.1 |
Pfam | PF15613 |
WSD | Family | 1028 | 1101 | 9.6e-22 | 77.7 | Williams-Beuren syndrome DDT (WSD), D-TOX E motif |
XP_057764437.1 |
Pfam | PF31066 |
DUF8799 | Domain | 1255 | 1318 | 8.1e-20 | 71.2 | Domain of unknown function (DUF8799) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。