Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000768`

染色体: Chr05 坐标: 5978121-5984606 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000768`
名称	SmilChr05G000768
描述	receptor-like protein 4
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	5978121 - 5984606 / `-`

ID 对照

NCBI Gene ID	`LOC130985482`
GeneID	`130985482`
locus_tag	`-`
NCBI Name	`LOC130985482`
原始查询	`SmilChr05G000768`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like protein 4
产物	receptor-like protein 4
Arabidopsis	`AT1G28340` (RLP4) receptor like protein 4 [Source:NCBI gene (formerly Entrezgene);Acc:839730] identity=68.3; qcov=0.966; evalue=0; confidence=high
Rice	`Os07g0501800` - identity=61.1; qcov=0.984; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00560 (LRR_1); PF11721 (Malectin); PF12819 (Malectin_like); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:130985482

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057764456.1`
2	Cell wall	细胞壁	0.20000	`XP_057764456.1`
3	Nucleus	细胞核	0.00000	`XP_057764456.1`
4	Chromosome	染色体	0.00000	`XP_057764456.1`
5	Centromere	着丝粒	0.00000	`XP_057764456.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:5978512`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,B108,B117
`Chr5:5978539`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr5:5978736`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A21,B108,B117,D10,D11
`Chr5:5978762`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B23,C81
`Chr5:5978763`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr5:5979349`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C47,C73,D6
`Chr5:5982558`	`CT`	`C`	1bp_deletion	frameshift_variant	106	A11,A16,A19,A21,A23,A24,A9,B101,B102,B105,B108,B111,B112,B115,B12,B122,B127,B13,B132,B135,B137,B138,B17,B18,B21,B23,B24,B26,B3,B30,B34,B38,B39,B4,B41,B44,B45,B51,B53,B54,B56,B57,B58,B59,B6,B61,B7,B70,B73,B80,B86,B87,B88,B89,B9,B91,B96,B98,B99,C10,C12,C13,C17,C19,C20,C23,C25,C27,C29,C30,C31,C38,C39,C42,C44,C46,C47,C48,C49,C51,C52,C53,C55,C56,C57,C58,C6,C60,C63,C66,C69,C73,C74,C75,C76,C78,C79,C8,C80,C81,C85,C87,D10,D3,D5,D7
`Chr5:5982579`	`TTC`	`T`	2bp_deletion	frameshift_variant	79	A11,A19,A21,A23,A24,A9,B101,B102,B108,B111,B112,B12,B120,B127,B132,B135,B138,B17,B21,B23,B24,B26,B3,B34,B38,B39,B4,B41,B44,B45,B51,B53,B54,B57,B58,B61,B70,B73,B80,B86,B88,B89,B98,C10,C12,C13,C17,C19,C20,C25,C27,C29,C30,C31,C42,C44,C47,C48,C49,C51,C52,C57,C6,C63,C69,C73,C74,C75,C76,C78,C79,C8,C80,C81,C85,C87,D10,D3,D5
`Chr5:5982582`	`AGC`	`A`	2bp_deletion	frameshift_variant	18	A23,B138,B24,B26,B45,B54,B57,B80,B88,C13,C17,C20,C51,C57,C76,C78,C87,D5
`Chr5:5982590`	`C`	`CTT`	2bp_insertion	frameshift_variant	27	B105,B115,B122,B137,B138,B140,B18,B30,B56,B59,B6,B87,B9,B91,B96,B99,C19,C23,C38,C39,C46,C53,C55,C56,C66,C81,D7
`Chr5:5982597`	`CA`	`C`	1bp_deletion	frameshift_variant	35	A23,B105,B122,B137,B138,B140,B18,B24,B26,B45,B54,B56,B57,B59,B6,B80,B9,B96,B99,C19,C20,C23,C38,C39,C46,C51,C53,C56,C57,C66,C78,C81,C87,D5,D7
`Chr5:5982598`	`A`	`ATT`	2bp_insertion	stop_gained,frameshift_variant	66	A11,A19,A21,A24,A9,B101,B102,B108,B111,B112,B12,B120,B127,B132,B135,B17,B21,B23,B3,B34,B38,B39,B4,B41,B44,B51,B53,B54,B58,B61,B70,B73,B86,B89,B98,C10,C12,C13,C17,C19,C25,C27,C29,C30,C31,C42,C44,C47,C48,C49,C52,C6,C60,C63,C69,C73,C74,C75,C76,C79,C8,C80,C81,C85,D10,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764456.1

624 aa

312

624

Malectin_like

Malectin

LRR_1

LRR_8

LRR_1

PF12819 Malectin_like 30-362 aa PF11721 Malectin 198-356 aa PF00560 LRR_1 446-467 aa PF13855 LRR_8 446-505 aa PF00560 LRR_1 470-492 aa PF00560 LRR_1 494-514 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764456.1`	Pfam	`PF12819`	Malectin_like	Domain	30	362	7.7e-51	174.0	Malectin-like domain
`XP_057764456.1`	Pfam	`PF11721`	Malectin	Domain	198	356	1.2e-16	61.9	Malectin domain
`XP_057764456.1`	Pfam	`PF00560`	LRR_1	Repeat	446	467	4.8e-12	44.2	Leucine Rich Repeat
`XP_057764456.1`	Pfam	`PF13855`	LRR_8	Repeat	446	505	2.3e-08	34.4	Leucine rich repeat
`XP_057764456.1`	Pfam	`PF00560`	LRR_1	Repeat	470	492	4.8e-12	44.2	Leucine Rich Repeat
`XP_057764456.1`	Pfam	`PF00560`	LRR_1	Repeat	494	514	4.8e-12	44.2	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057908473.1
AATATCATTCACGGGTCAAAAACAAAAAGACTCGAAATTGAAGAGACAAGATTTTCCATTTTTTTATTTTCTCACATTCACAAAACTAGAATAAATTTTCAACTGTTTCCACCTGCACAGCTGCACTGCACGTCCACCACACTACAACTTCCTTTTTTCCAATATTTATTACGGCCAAATCGCAGTCAAGAATATCTATCTGCTCGATCCAAGATAGGGATGCGGAATGTCATTCACTTTTTTCCTTGAATAATTCGAGA...

CDS

1 records

下载 CDS FASTA

LOC130985482
ATGCTGGAGATTCGGGTGCTCTTAGTTTTAGTTGCCTTATTATTTGCTCCGGAACCTTCTCTTGCTCGAGCACCATATGCATTGCGAATAAGCTGTGGAGCTCGTGCTGATGTTCATACTTCTCCAACAAATACTCTTTGGTACAAGGATTTTGCTTACACTGGAGGCATTCCTGCTAATGCGACCCTCCCCAGTTTCATCTCTCCTCCACTAGAGACTCTCCGATATTTTCCTTTGTCTGAGGGGCCTGAAAACTGCTA...

Protein

1 records

下载 Protein FASTA

XP_057764456.1
MLEIRVLLVLVALLFAPEPSLARAPYALRISCGARADVHTSPTNTLWYKDFAYTGGIPANATLPSFISPPLETLRYFPLSEGPENCYNIKNVPRGHYLVRIFFGLLAEPSFDNEPLFDVSIEGTLIYSLPSGWSNHDDERAFVEGLIFLKDGTSSLCFHSTGHGDPAILSIEILQIDNRAYYFGNGYGQGTILRTDRRLNCGAEKPKFGADYSADRWGGDRFWNYLPTFGENSDKVISTQKSIKQTSQSPNFYPEALYQT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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