Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000769`

染色体: Chr05 坐标: 5989577-6004035 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000769`
名称	SmilChr05G000769
描述	protein FRIGIDA-ESSENTIAL 1
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	5989577 - 6004035 / `+`

ID 对照

NCBI Gene ID	`LOC130985484`
GeneID	`130985484`
locus_tag	`-`
NCBI Name	`LOC130985484`
原始查询	`SmilChr05G000769`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein FRIGIDA-ESSENTIAL 1
产物	protein FRIGIDA-ESSENTIAL 1
Arabidopsis	`AT2G33835` (FES1) Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:NCBI gene (formerly Entrezgene);Acc:817951] identity=25.6; qcov=0.847; evalue=1.7e-27; confidence=low
Rice	`Os05g0497500` (OsC3H36) - identity=32.1; qcov=0.383; evalue=1.15e-20; confidence=low
GO	GO:0046872 (metal ion binding)
KEGG	-
Pfam	PF00642 (zf-CCCH)
InterPro	-
eggNOG	-
NR	GeneID:130985484

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057764457.1`
2	Chromosome	染色体	0.00000	`XP_057764457.1`
3	Centromere	着丝粒	0.00000	`XP_057764457.1`
4	Chromatin	染色质	0.00000	`XP_057764457.1`
5	Telomere	端粒	0.00000	`XP_057764457.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:5989742`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr5:5995089`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr5:5995375`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,B2
`Chr5:5995402`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr5:5995737`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A16
`Chr5:5995772`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B104,B21,B31,B97,C20
`Chr5:5995962`	`CCA`	`C`	2bp_deletion	frameshift_variant	1	B5
`Chr5:5995962`	`CCA`	`C`	2bp_deletion	CDS_variant	1	B5
`Chr5:5995963`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B132,B45
`Chr5:5996400`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr5:5996606`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:5997062`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A4,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764457.1

666 aa

333

666

zf-CCCH

PF00642 zf-CCCH 224-243 aa

XP_057764458.1

666 aa

333

666

zf-CCCH

PF00642 zf-CCCH 224-243 aa

XP_057764459.1

665 aa

332

665

zf-CCCH

PF00642 zf-CCCH 224-243 aa

XP_057764461.1

620 aa

310

620

zf-CCCH

PF00642 zf-CCCH 178-197 aa

XP_057764462.1

619 aa

310

619

zf-CCCH

PF00642 zf-CCCH 178-197 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764457.1`	Pfam	`PF00642`	zf-CCCH	Family	224	243	5.3e-05	23.7	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057764458.1`	Pfam	`PF00642`	zf-CCCH	Family	224	243	5.3e-05	23.7	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057764459.1`	Pfam	`PF00642`	zf-CCCH	Family	224	243	5.3e-05	23.7	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057764461.1`	Pfam	`PF00642`	zf-CCCH	Family	178	197	4.8e-05	23.9	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057764462.1`	Pfam	`PF00642`	zf-CCCH	Family	178	197	4.8e-05	23.9	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XR_009088977.1
GGGACATAAAACATGACGCTGAATCGCTGATGTTGACACCAAATTCACTAATCCACAGCTCCCCCAATATATCATCGCCCGCTTACGCCGCCGCCTTCTGTGCCATCTTAAAGCCCTAAATGGTCTCATCCCACACGGTGGTTTCGCCTTCTCCACCGAAACCTTTGACTTCCGACGGCGATGATGACGAATACGAGATCGTGTACGAGGAAATTGAAGAGGAAATCGAGGTGGAAGAGGAGATTGAAGTCGAGGAAGAG...

XR_009088978.1
GGGACATAAAACATGACGCTGAATCGCTGATGTTGACACCAAATTCACTAATCCACAGCTCCCCCAATATATCATCGCCCGCTTACGCCGCCGCCTTCTGTGCCATCTTAAAGCCCTAAATGGTCTCATCCCACACGGTGGTTTCGCCTTCTCCACCGAAACCTTTGACTTCCGACGGCGATGATGACGAATACGAGATCGTGTACGAGGAAATTGAAGAGGAAATCGAGGTGGAAGAGGAGATTGAAGTCGAGGAAGAG...

CDS

5 records

下载 CDS FASTA

LOC130985484
ATGGTCTCATCCCACACGGTGGTTTCGCCTTCTCCACCGAAACCTTTGACTTCCGACGGCGATGATGACGAATACGAGATCGTGTACGAGGAAATTGAAGAGGAAATCGAGGTGGAAGAGGAGATTGAAGTCGAGGAAGAGATAGAGGAAGAAGACGATGTCGGAGCCGAGCACGTCAAAAGTGGAGGGGAGGTTGAAATTGGAGAAGACCTAGCTGCTTCAAGCCAGAAAAATCAGAAAAGTGATATGGGTAAGATTCT...

Protein

5 records

下载 Protein FASTA

XP_057764457.1
MVSSHTVVSPSPPKPLTSDGDDDEYEIVYEEIEEEIEVEEEIEVEEEIEEEDDVGAEHVKSGGEVEIGEDLAASSQKNQKSDMGKILELDEHKDHRHSSSLTEGVFVKSIGDAKTSESSEKEGLYVNGGKISKYNKEKTLLNDSGEVNHAKTTTFIGDVNATSTMANASGENVSAIASIMAETNHSALEGVGNISPRLHAAKIRFRDPLPSAEFGRESKKLRIVCEFHAKGWCIRGKTCRFLHIKDGPDAVVLKSEALGR...

XP_057764458.1
MVSSHTVVSPSPPKPLTSDGDDDEYEIVYEEIEEEIEVEEEIEVEEEIEEEDDVGAEHVKSGGEVEIGEDLAASSQKNQKSDMGKILELDEHKDHRHSSSLTEGVFVKSIGDAKTSESSEKEGLYVNGGKISKYNKEKTLLNDSGEVNHAKTTTFIGDVNATSTMANASGENVSAIASIMAETNHSALEGVGNISPRLHAAKIRFRDPLPSAEFGRESKKLRIVCEFHAKGWCIRGKTCRFLHIKDGPDAVVLKSEALGR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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