Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000771`

染色体: Chr05 坐标: 6006738-6011584 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000771`
名称	SmilChr05G000771
描述	putative E3 ubiquitin-protein ligase RING1a
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	6006738 - 6011584 / `-`

ID 对照

NCBI Gene ID	`LOC130985486`
GeneID	`130985486`
locus_tag	`-`
NCBI Name	`LOC130985486`
原始查询	`SmilChr05G000771`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative E3 ubiquitin-protein ligase RING1a
产物	putative E3 ubiquitin-protein ligase RING1a
Arabidopsis	`AT5G44280` (RING1A) RING 1A [Source:NCBI gene (formerly Entrezgene);Acc:834451] identity=45.8; qcov=1.04; evalue=1.06e-96; confidence=high
Rice	`Os05g0497600` (OsAIR1) - identity=48.8; qcov=1.02; evalue=2.47e-97; confidence=high
GO	-
KEGG	smil03083 (Polycomb repressive complex - Salvia miltiorrhiza (redroot sage))
Pfam	PF00097 (zf-C3HC4); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2)
InterPro	-
eggNOG	-
NR	GeneID:130985486

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057764464.1`
2	Chromosome	染色体	0.20000	`XP_057764464.1`
3	Nucleoplasm	核质	0.20000	`XP_057764466.1`
4	Centromere	着丝粒	0.00000	`XP_057764464.1`
5	Chromatin	染色质	0.00000	`XP_057764464.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:6007474`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C67
`Chr5:6008221`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr5:6008504`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B111,C19
`Chr5:6008537`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,B2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764464.1

455 aa

228

455

zf-C3HC4_2

zf-RING_2

zf-C3HC4

PF13923 zf-C3HC4_2 82-122 aa PF13639 zf-RING_2 82-123 aa PF00097 zf-C3HC4 83-122 aa

XP_057764465.1

447 aa

224

447

zf-C3HC4_2

zf-RING_2

zf-C3HC4

PF13923 zf-C3HC4_2 74-114 aa PF13639 zf-RING_2 74-115 aa PF00097 zf-C3HC4 75-114 aa

XP_057764466.1

441 aa

220

441

zf-C3HC4_2

zf-RING_2

zf-C3HC4

PF13923 zf-C3HC4_2 82-122 aa PF13639 zf-RING_2 82-123 aa PF00097 zf-C3HC4 83-122 aa

XP_057764467.1

433 aa

216

433

zf-C3HC4_2

zf-RING_2

zf-C3HC4

PF13923 zf-C3HC4_2 74-114 aa PF13639 zf-RING_2 74-115 aa PF00097 zf-C3HC4 75-114 aa

XP_057764468.1

359 aa

180

359

zf-C3HC4

zf-C3HC4_2

PF00097 zf-C3HC4 1-26 aa PF13923 zf-C3HC4_2 2-26 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764464.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	82	122	8.3e-12	45.4	Zinc finger, C3HC4 type (RING finger)
`XP_057764464.1`	Pfam	`PF13639`	zf-RING_2	Domain	82	123	6.3e-08	33.5	Ring finger domain
`XP_057764464.1`	Pfam	`PF00097`	zf-C3HC4	Domain	83	122	6e-10	39.6	Zinc finger, C3HC4 type (RING finger)
`XP_057764465.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	74	114	8.5e-12	45.4	Zinc finger, C3HC4 type (RING finger)
`XP_057764465.1`	Pfam	`PF13639`	zf-RING_2	Domain	74	115	6.5e-08	33.4	Ring finger domain
`XP_057764465.1`	Pfam	`PF00097`	zf-C3HC4	Domain	75	114	6e-10	39.5	Zinc finger, C3HC4 type (RING finger)
`XP_057764466.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	82	122	7.9e-12	45.5	Zinc finger, C3HC4 type (RING finger)
`XP_057764466.1`	Pfam	`PF13639`	zf-RING_2	Domain	82	123	6e-08	33.5	Ring finger domain
`XP_057764466.1`	Pfam	`PF00097`	zf-C3HC4	Domain	83	122	5.7e-10	39.6	Zinc finger, C3HC4 type (RING finger)
`XP_057764467.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	74	114	8.1e-12	45.5	Zinc finger, C3HC4 type (RING finger)
`XP_057764467.1`	Pfam	`PF13639`	zf-RING_2	Domain	74	115	6.2e-08	33.5	Ring finger domain
`XP_057764467.1`	Pfam	`PF00097`	zf-C3HC4	Domain	75	114	5.8e-10	39.6	Zinc finger, C3HC4 type (RING finger)
`XP_057764468.1`	Pfam	`PF00097`	zf-C3HC4	Domain	1	26	5e-06	27.0	Zinc finger, C3HC4 type (RING finger)
`XP_057764468.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	2	26	8e-07	29.5	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057908482.1
GGGAGAACTGGATAGAAGAAACCGGAGACAATCTAACCCAAAGGCCAAAGCACACAGATAATTTACAACAAAAATACATAATAAATATAACACACCATTTCTACAAGCACCAAAACGAAGCCACGCTCAATTTTCTCATTTCTTCGCTGACTCCGTCTCTCCTCCACTGCACCACACCCACCGCCACCACCGCCGGTCCCATCACCGTCGCGAAGCTCCTCACCTCCACCTAATCAACTCAATGCCGGCCCAAAAGCGCT...

XM_057908483.1
ACAAAAATACATAATAAATATAACACACCATTTCTACAAGCACCAAAACGAAGCCACGCTCAATTTTCTCATTTCTTCGCTGACTCCGTCTCTCCTCCACTGCACCACACCCACCGCCACCACCGCCGGTCCCATCACCGTCGCGAAGCTCCTCACCTCCACCTAATCAACTCAATGCCGGCCCAAAAGCGCTCGGCCGAAACCACCACTCCGCCTCCTTCTCCTCCGCCACCGCTTAACGAAGAAAAACTCGATGATTC...

CDS

5 records

下载 CDS FASTA

LOC130985486
ATGCCGGCCCAAAAGCGCTCGGCCGAAACCACCACTCCGCCTCCTTCTCCTCCGCCACCGCTTAACGAAGAAAAACTCGATGATTCGCTCCAGGACAGCGAGAATCACAACCACGAGCAGACCGTGAACGCCAGCGATTCCGATGAGAGCTCTTACTCCAGTGGTGAAGAAAAGGACGAATTTATTGTGGTGAAGTTGGCAGAAATACGCAAGGAAGTGCAGTGCCCAATATGTTTAGGTATAATTAGGAAGACAAGGAC...

Protein

5 records

下载 Protein FASTA

XP_057764464.1
MPAQKRSAETTTPPPSPPPPLNEEKLDDSLQDSENHNHEQTVNASGTCSDAYSYSDESSYSSGEEKDEFIVVKLAEIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIATLYPDIDKYEEEELAFHEEEKARNKQIQASISQTFRRQAEALGKKRTSARVTAAAFVRRQGNYRNLRGRRNRMAENQGSDEEEGTNGNDGSKDSSSADERSPDIKSKRYKRRRGART...

XP_057764465.1
MPAQKRSAETTTPPPSPPPPLNEEKLDDSLQDSENHNHEQTVNASDSDESSYSSGEEKDEFIVVKLAEIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIATLYPDIDKYEEEELAFHEEEKARNKQIQASISQTFRRQAEALGKKRTSARVTAAAFVRRQGNYRNLRGRRNRMAENQGSDEEEGTNGNDGSKDSSSADERSPDIKSKRYKRRRGARTSQTSGANA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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