Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000795`

染色体: Chr05 坐标: 6228809-6236029 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000795`
名称	SmilChr05G000795
描述	callose synthase 11-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	6228809 - 6236029 / `-`

ID 对照

NCBI Gene ID	`LOC130985510`
GeneID	`130985510`
locus_tag	`-`
NCBI Name	`LOC130985510`
原始查询	`SmilChr05G000795`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	callose synthase 11-like
产物	callose synthase 11-like
Arabidopsis	`AT4G04970` (GSL1) glucan synthase-like 1 [Source:NCBI gene (formerly Entrezgene);Acc:825838] identity=69.2; qcov=0.999; evalue=0; confidence=high
Rice	`Os01g0754200` (OsGSL3) - identity=64.7; qcov=0.998; evalue=0; confidence=high
GO	GO:0000148 (1,3-beta-D-glucan synthase complex); GO:0003843 (1,3-beta-D-glucan synthase activity); GO:0005886 (plasma membrane); GO:0006075 ((1->3)-beta-D-glucan biosynthetic process)
KEGG	-
Pfam	PF02364 (Glucan_synthase); PF14288 (FKS1_dom1); PF25968 (CALS1)
InterPro	-
eggNOG	-
NR	GeneID:130985510

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057764492.1`
2	Nucleus	细胞核	0.00000	`XP_057764492.1`
3	Chromosome	染色体	0.00000	`XP_057764492.1`
4	Centromere	着丝粒	0.00000	`XP_057764492.1`
5	Chromatin	染色质	0.00000	`XP_057764492.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:6230313`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A16
`Chr5:6230343`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B82,C18,C48
`Chr5:6230498`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B126,B24,B93,B98
`Chr5:6230583`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B111,C19
`Chr5:6230630`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B128,C44
`Chr5:6230705`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B55,C8
`Chr5:6230921`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A19,C37
`Chr5:6231108`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B132,B45
`Chr5:6231162`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A5,B9,B98
`Chr5:6231189`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A5,B9,B98
`Chr5:6231624`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B45,C27
`Chr5:6232197`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C30

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764492.1

1775 aa

888

1775

FKS1_dom1

CALS1

Glucan_synthase

PF14288 FKS1_dom1 163-275 aa PF25968 CALS1 689-868 aa PF02364 Glucan_synthase 877-1673 aa

XP_057764493.1

1775 aa

888

1775

FKS1_dom1

CALS1

Glucan_synthase

PF14288 FKS1_dom1 163-275 aa PF25968 CALS1 689-868 aa PF02364 Glucan_synthase 877-1673 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764492.1`	Pfam	`PF14288`	FKS1_dom1	Family	163	275	7.4e-43	146.1	1,3-beta-glucan synthase subunit FKS1, domain-1
`XP_057764492.1`	Pfam	`PF25968`	CALS1	Domain	689	868	3.6e-24	86.2	Callose synthase 1 domain
`XP_057764492.1`	Pfam	`PF02364`	Glucan_synthase	Family	877	1673	2.1e-259	863.9	1,3-beta-glucan synthase component
`XP_057764493.1`	Pfam	`PF14288`	FKS1_dom1	Family	163	275	7.4e-43	146.1	1,3-beta-glucan synthase subunit FKS1, domain-1
`XP_057764493.1`	Pfam	`PF25968`	CALS1	Domain	689	868	3.6e-24	86.2	Callose synthase 1 domain
`XP_057764493.1`	Pfam	`PF02364`	Glucan_synthase	Family	877	1673	2.1e-259	863.9	1,3-beta-glucan synthase component

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908509.1
CAAATTGTTATACGTAAAAATGTTCGCACGTGTAAAAACTGTAATTACGTGCCCGTTATGGCAATACAAAGCAGCGCCACTTTTCACTTTCATTCGCTTCGTCAGCGCGTGAGAAACACTCACCCTCTCACTATACTGTAACTGACATCCATGCCGCTCGACACAACCCACGATCGCCAAAACCAGTCAATCAAGAAACGCAATTTGGCATTTATCTACTCTATTTTTGATTAATTATTCGTACTATGCGTGTATCTCTC...

XM_057908510.1
CAAATTGTTATACGTAAAAATGTTCGCACGTGTAAAAACTGTAATTACGTGCCCGTTATGGCAATACAAAGCAGCGCCACTTTTCACTTTCATTCGCTTCGTCAGCGCGTGAGAAACACTCACCCTCTCACTATACTGTAACTGACATCCATGCCGCTCGACACAACCCACGATCGCCAAAACCAGTCAATCAAGAAACGCAATTTGGCATTTATCTACTCTATTTTTGATTAATTATTCGTACTATGCGTGTATCTCTC...

CDS

2 records

下载 CDS FASTA

LOC130985510
ATGAATCTGAGGCAGCGACCGCCTCCGACGCGCAACCGTGGGCCTTACGCGGCTCAGCCTCCACCACCGCAGCTGTTGTCGGAGCCCTTCAACATCATTCCAATACACAACCTCCTCCTGGACCACCCCTCCCTCCGCTTCCCAGAGGTACGCGCCGCCGCCGCCGCCTTGCGCTCCGCCGGGGACCTCCGCAAACCGCCGTTCAACCCATGGCACGACTCCATGGACCTCCTAGACTGGCTCGGCTTGTTCTTCGGCTT...

Protein

2 records

下载 Protein FASTA

XP_057764492.1
MNLRQRPPPTRNRGPYAAQPPPPQLLSEPFNIIPIHNLLLDHPSLRFPEVRAAAAALRSAGDLRKPPFNPWHDSMDLLDWLGLFFGFQRDNVRNQREHLVLHLANSQMRLQPPPSAPDRLDGGVLRRFRVKLLKNYNSWCSYLGKRSQVRLPSRHNPDLERRELLYVCLYLLIWGEAANLRFLPECLCYIYHHMALELNFILDDHVDESTAQLFVPSTCKQYGFLDYVVKPIYTTIKGEAARSRNGTAPHSAWRNYDDIN...

XP_057764493.1
MNLRQRPPPTRNRGPYAAQPPPPQLLSEPFNIIPIHNLLLDHPSLRFPEVRAAAAALRSAGDLRKPPFNPWHDSMDLLDWLGLFFGFQRDNVRNQREHLVLHLANSQMRLQPPPSAPDRLDGGVLRRFRVKLLKNYNSWCSYLGKRSQVRLPSRHNPDLERRELLYVCLYLLIWGEAANLRFLPECLCYIYHHMALELNFILDDHVDESTAQLFVPSTCKQYGFLDYVVKPIYTTIKGEAARSRNGTAPHSAWRNYDDIN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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