当前解析结果
SmilChr05G000801| 统一新 Gene ID | SmilChr05G000801 |
|---|---|
| 名称 | SmilChr05G000801 |
| 描述 | pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 6270958 - 6272953 / - |
| NCBI Gene ID | LOC130985515 |
|---|---|
| GeneID | 130985515 |
| locus_tag | - |
| NCBI Name | LOC130985515 |
| 原始查询 | SmilChr05G000801 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like |
| 产物 | pentatricopeptide repeat-containing protein At2g20710%2C mitochondrial-like |
| Arabidopsis | AT2G20710 (AT2G20710)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816599] identity=34.7; qcov=0.866; evalue=4.21e-87; confidence=low |
| Rice | Os10g0501200 (PPR9)- identity=31.7; qcov=0.929; evalue=5.62e-71; confidence=low |
| GO | GO:0005515 (protein binding); GO:0005739 (mitochondrion) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13041 (PPR_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985515 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057764500.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057764500.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057764500.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057764500.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057764500.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:6271138 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr5:6271221 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B121,B4,B54 |
Chr5:6271260 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr5:6271266 |
T |
TC |
1bp_insertion | frameshift_variant | 9 | A18,B10,B101,B27,B81,C12,C18,C4,C70 |
Chr5:6271285 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | A18,B10,C18,D1 |
Chr5:6271285 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B10,C18,D1 |
Chr5:6271286 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B27,C4,C70 |
Chr5:6271295 |
TAA |
T |
2bp_deletion | frameshift_variant | 1 | B101 |
Chr5:6271295 |
TAA |
T |
2bp_deletion | CDS_variant | 1 | B101 |
Chr5:6271334 |
A |
AGT |
2bp_insertion | frameshift_variant | 6 | A14,A18,A20,B130,B131,B84 |
Chr5:6271338 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B27,B81,C4,C70 |
Chr5:6271365 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764500.1PF01535
PPR 180-208 aa
PF13041
PPR_2 180-223 aa
PF01535
PPR 320-345 aa
PF01535
PPR 357-383 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764500.1 |
Pfam | PF01535 |
PPR | Repeat | 180 | 208 | 6e-22 | 77.0 | PPR repeat |
XP_057764500.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 180 | 223 | 1.8e-19 | 70.3 | PPR repeat family |
XP_057764500.1 |
Pfam | PF01535 |
PPR | Repeat | 320 | 345 | 6e-22 | 77.0 | PPR repeat |
XP_057764500.1 |
Pfam | PF01535 |
PPR | Repeat | 357 | 383 | 6e-22 | 77.0 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。