Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G000802

染色体: Chr05 坐标: 6279225-6282578 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G000802
名称SmilChr05G000802
描述heat stress transcription factor B-1-like
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向6279225 - 6282578 / +

ID 对照

NCBI Gene IDLOC130985517
GeneID130985517
locus_tag-
NCBI NameLOC130985517
原始查询SmilChr05G000802

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述heat stress transcription factor B-1-like
产物heat stress transcription factor B-1-like
ArabidopsisAT4G36990 (HSF4)
heat shock factor 4 [Source:NCBI gene (formerly Entrezgene);Acc:829853]
identity=61.2; qcov=0.677; evalue=1.19e-23; confidence=medium
RiceOs08g0546800 (HSFB2B)
-
identity=51.3; qcov=0.768; evalue=2.77e-22; confidence=medium
GOGO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006357 (regulation of transcription by RNA polymerase II)
KEGG-
PfamPF00447 (HSF_DNA-bind)
InterPro-
eggNOG-
NRGeneID:130985517

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057764502.1
2 Chromosome 染色体 0.00000 XP_057764502.1
3 Centromere 着丝粒 0.00000 XP_057764502.1
4 Chromatin 染色质 0.00000 XP_057764502.1
5 Telomere 端粒 0.00000 XP_057764502.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:6279470 G A EMS_canonical_SNV CDS_variant 4 B126,B24,B93,B98
Chr5:6279505 G A EMS_canonical_SNV CDS_variant 1 B80
Chr5:6279591 C T EMS_canonical_SNV CDS_variant 3 B126,B24,B98
Chr5:6282251 G A EMS_canonical_SNV CDS_variant 1 B14
Chr5:6282336 G A EMS_canonical_SNV CDS_variant 1 B113
Chr5:6282373 G A EMS_canonical_SNV CDS_variant 4 A10,B22,B91,D10
Chr5:6282404 A AT 1bp_insertion frameshift_variant 8 A9,B34,B90,B92,C1,C64,C66,D3
Chr5:6282451 C T EMS_canonical_SNV stop_gained 16 A3,A9,B123,B126,B133,B24,B34,B90,B92,B93,B96,B98,C1,C64,C66,D3
Chr5:6282467 C T EMS_canonical_SNV CDS_variant 1 B12

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057764502.1
186 aa
N
1
93
186
HSF_DNA-bind
C
PF00447 HSF_DNA-bind 21-115 aa
XP_057764503.1
99 aa
N
1
50
99
HSF_DNA-bind
C
PF00447 HSF_DNA-bind 21-84 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057764502.1 Pfam PF00447 HSF_DNA-bind Domain 21 115 5.1e-27 95.0 HSF-type DNA-binding
XP_057764503.1 Pfam PF00447 HSF_DNA-bind Domain 21 84 5.2e-18 66.1 HSF-type DNA-binding

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057908519.1
GGGCATTGAAAAAGTTGAAAAAGAGTCGAGAAAGCCCAAAAATGCAGCGCCACTTTGTTCCCACTATAAATACAAGAACAAGAAAGCGTGAGTTTTTGAGCGTCTGCTTCACTTAAATTATGAAGAAGAAGAATATATTTGAAGGATCGATGAGGCGCAAAATGAAGAGCCCCGCTCCATTTGTGTCCAAGACTTATGATCTATTGGAGGCGGAGGCGGAGGAGCGGCGCGGCGGGGAGAAGATAGTTTCGTGGAATTCG...
XM_057908520.1
AGAGTCGAGAAAGCCCAAAAATGCAGCGCCACTTTGTTCCCACTATAAATACAAGAACAAGAAAGCGTGAGTTTTTGAGCGTCTGCTTCACTTAAATTATGAAGAAGAAGAATATATTTGAAGGATCGATGAGGCGCAAAATGAAGAGCCCCGCTCCATTTGTGTCCAAGACTTATGATCTATTGGAGGCGGAGGCGGAGGAGCGGCGCGGCGGGGAGAAGATAGTTTCGTGGAATTCGGAAGGGAATGGGTTTGTGGTG...

CDS

2 records

下载 CDS FASTA
LOC130985517
ATGAAGAAGAAGAATATATTTGAAGGATCGATGAGGCGCAAAATGAAGAGCCCCGCTCCATTTGTGTCCAAGACTTATGATCTATTGGAGGCGGAGGCGGAGGAGCGGCGCGGCGGGGAGAAGATAGTTTCGTGGAATTCGGAAGGGAATGGGTTTGTGGTGTGGTCGCCGGCGGAGTTTTCGGAGCTCATGTTGCCTAACTATTTCAAGCACAATAACTTCTCCAGCTTCATTCGACAGCTTAACACCTATGGATTCAA...
LOC130985517
ATGAAGAAGAAGAATATATTTGAAGGATCGATGAGGCGCAAAATGAAGAGCCCCGCTCCATTTGTGTCCAAGACTTATGATCTATTGGAGGCGGAGGCGGAGGAGCGGCGCGGCGGGGAGAAGATAGTTTCGTGGAATTCGGAAGGGAATGGGTTTGTGGTGTGGTCGCCGGCGGAGTTTTCGGAGCTCATGTTGCCTAACTATTTCAAGCACAATAACTTCTCCAGCTTCATTCGACAGCTTAACACCTATACAGGGAT...

Protein

2 records

下载 Protein FASTA
XP_057764502.1
MKKKNIFEGSMRRKMKSPAPFVSKTYDLLEAEAEERRGGEKIVSWNSEGNGFVVWSPAEFSELMLPNYFKHNNFSSFIRQLNTYGFKKTSSRRWEFLHEKFQRGKRQLLLEISRKKCEPTAFPPYLKAASPDHRRHAQIVRDKLREENHKLTNEKRELEMQIAHFKALQLSLLQCLSNQQQTQLPP
XP_057764503.1
MKKKNIFEGSMRRKMKSPAPFVSKTYDLLEAEAEERRGGEKIVSWNSEGNGFVVWSPAEFSELMLPNYFKHNNFSSFIRQLNTYTGIQEDIIETMGIPA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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