Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000809`

染色体: Chr05 坐标: 6311172-6317040 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000809`
名称	SmilChr05G000809
描述	uncharacterized SmilChr05G000809
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	6311172 - 6317040 / `-`

ID 对照

NCBI Gene ID	`LOC130985523`
GeneID	`130985523`
locus_tag	`-`
NCBI Name	`LOC130985523`
原始查询	`SmilChr05G000809`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA mismatch repair protein MutS, type 2 [Source:NCBI gene (formerly Entrezgene);Acc:842815]; symbol=AT1G65070; hit=AT1G65070; species=arabidopsis; confidence=high
产物	DNA mismatch repair protein MutS, type 2 [Source:NCBI gene (formerly Entrezgene);Acc:842815]; symbol=AT1G65070; hit=AT1G65070; species=arabidopsis; confidence=high
Arabidopsis	`AT1G65070` (AT1G65070) DNA mismatch repair protein MutS, type 2 [Source:NCBI gene (formerly Entrezgene);Acc:842815] identity=54.2; qcov=0.981; evalue=0; confidence=high
Rice	`Os04g0680700` - identity=47.4; qcov=0.489; evalue=1.43e-128; confidence=medium
GO	GO:0004519 (endonuclease activity); GO:0005524 (ATP binding); GO:0006298 (mismatch repair); GO:0016887 (ATP hydrolysis activity); GO:0030983 (mismatched DNA binding); GO:0045910 (negative regulation of DNA recombination); GO:0140664 (ATP-dependent DNA damage sensor activity)
KEGG	smil03430 (Mismatch repair - Salvia miltiorrhiza (redroot sage))
Pfam	PF00488 (MutS_V); PF01713 (Smr); PF20297 (MSSS)
InterPro	-
eggNOG	-
NR	GeneID:130985523

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057764507.1`
2	Chloroplast stroma	叶绿体基质	0.60000	`XP_057764507.1`
3	Nucleus	细胞核	0.00000	`XP_057764507.1`
4	Chromosome	染色体	0.00000	`XP_057764507.1`
5	Centromere	着丝粒	0.00000	`XP_057764507.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:6311340`	`TA`	`T`	1bp_deletion	frameshift_variant	1	C20
`Chr5:6311340`	`TA`	`T`	1bp_deletion	CDS_variant	1	C20
`Chr5:6311345`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B125,B21,D10,D8
`Chr5:6311428`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A8,B65,B67,B89,C76
`Chr5:6311524`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B11
`Chr5:6311615`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B11
`Chr5:6312004`	`TCA`	`T`	2bp_deletion	frameshift_variant	18	A14,A25,B119,B127,B129,B19,B29,B36,B77,C15,C17,C19,C20,C21,C31,C40,C55,C79
`Chr5:6312074`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr5:6312096`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr5:6312237`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A8,B65,B67,B89,C76
`Chr5:6312276`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B70
`Chr5:6312276`	`TC`	`T`	1bp_deletion	CDS_variant	1	B70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764507.1

891 aa

446

891

MutS_V

MSSS

Smr

PF00488 MutS_V 407-591 aa PF20297 MSSS 725-767 aa PF01713 Smr 820-889 aa

XP_057764508.1

889 aa

444

889

MutS_V

MSSS

Smr

PF00488 MutS_V 405-589 aa PF20297 MSSS 723-765 aa PF01713 Smr 818-887 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764507.1`	Pfam	`PF00488`	MutS_V	Domain	407	591	8.1e-35	121.2	MutS domain V
`XP_057764507.1`	Pfam	`PF20297`	MSSS	Domain	725	767	3.5e-07	30.5	MutS2 and Smr-associated SH3 domain
`XP_057764507.1`	Pfam	`PF01713`	Smr	Domain	820	889	1.2e-12	48.4	Smr domain
`XP_057764508.1`	Pfam	`PF00488`	MutS_V	Domain	405	589	7.9e-35	121.3	MutS domain V
`XP_057764508.1`	Pfam	`PF20297`	MSSS	Domain	723	765	3.5e-07	30.5	MutS2 and Smr-associated SH3 domain
`XP_057764508.1`	Pfam	`PF01713`	Smr	Domain	818	887	1.2e-12	48.4	Smr domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908525.1
TAATTTTGTCATCATAATATTACTCTGCGCGTCTCCCATAATTTATAACCAAGCGTTTAAACTAAATTATACATTTTGGTTTTTTTTTTTTTCAAAAATTAATAGCCGTAAACTTAGGAAGGCTTTGGAAAGTGAAGTGTGAGTGATTAGTGAGAGTAGGAAGTTTTGGCATTGTGGATAGGAAAAGAAATTGAAATCGCGGCTGTGATTCCTTTCCATGATACTCGCTCACTCCCTCCTTCTCTCCAACACACCTCCGC...

XM_057908524.1
TAATTTTGTCATCATAATATTACTCTGCGCGTCTCCCATAATTTATAACCAAGCGTTTAAACTAAATTATACATTTTGGTTTTTTTTTTTTTCAAAAATTAATAGCCGTAAACTTAGGAAGGCTTTGGAAAGTGAAGTGTGAGTGATTAGTGAGAGTAGGAAGTTTTGGCATTGTGGATAGGAAAAGAAATTGAAATCGCGGCTGTGATTCCTTTCCATGATACTCGCTCACTCCCTCCTTCTCTCCAACACACCTCCGC...

CDS

2 records

下载 CDS FASTA

LOC130985523
ATGATACTCGCTCACTCCCTCCTTCTCTCCAACACACCTCCGCCCTCCCGCGCTACCGACCGACTCCAATTAGCCGACTCGCTCCAATCGGAGACCCTCAAGATTCTCGAATGGCCGTCCCTCTGCAACCAGCTCTCCGCCTTCACCTCCACCTCCATGGGTCTCTCAGCCGCCCAATCTGCAAGGATTCCTCTTGGCCGGACCCCAACCGAGACCCGCCGTCTCCTCGACCAGACCTCCGCCGCACTTGCAATGCCCCG...

Protein

2 records

下载 Protein FASTA

XP_057764507.1
MILAHSLLLSNTPPPSRATDRLQLADSLQSETLKILEWPSLCNQLSAFTSTSMGLSAAQSARIPLGRTPTETRRLLDQTSAALAMPRPLDFSGIEDVSRIVDAAVAGRILMIGELCSVRRTLRSARSLIQQLEEIASGSSSHDRSVCSPLLEILRECNFLAELERRIEFCVDCNFSVVLDQASEDLEMIRSERKTNMENLEAMLKKISSQIFQAGGIDRPLVTKRRSRMCVAIRTTHRSLLRDGVVLDSSSSGATYFVEP...

XP_057764508.1
MILAHSLLLSNTPPPSRATDRLQLADSLQSETLKILEWPSLCNQLSAFTSTSMGLSAAQSARIPLGRTPTETRRLLDQTSAALAMPRPLDFSGIEDVSRIVDAAVAGRILMIGELCSVRRTLRSARSLIQQLEEIASGSSSHDRCSPLLEILRECNFLAELERRIEFCVDCNFSVVLDQASEDLEMIRSERKTNMENLEAMLKKISSQIFQAGGIDRPLVTKRRSRMCVAIRTTHRSLLRDGVVLDSSSSGATYFVEPRE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器