Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000819`

染色体: Chr05 坐标: 6422809-6428166 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000819`
名称	SmilChr05G000819
描述	protein STRUBBELIG-RECEPTOR FAMILY 3-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	6422809 - 6428166 / `-`

ID 对照

NCBI Gene ID	`LOC130985534`
GeneID	`130985534`
locus_tag	`-`
NCBI Name	`LOC130985534`
原始查询	`SmilChr05G000819`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein STRUBBELIG-RECEPTOR FAMILY 3-like
产物	protein STRUBBELIG-RECEPTOR FAMILY 3-like
Arabidopsis	`AT4G03390` (SRF3) STRUBBELIG-receptor family 3 [Source:NCBI gene (formerly Entrezgene);Acc:827941] identity=51; qcov=1.01; evalue=0; confidence=high
Rice	`Os10g0389800` - identity=44; qcov=0.974; evalue=1.44e-167; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:130985534

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057764534.1`
2	Nucleus	细胞核	0.00000	`XP_057764534.1`
3	Chromosome	染色体	0.00000	`XP_057764534.1`
4	Centromere	着丝粒	0.00000	`XP_057764534.1`
5	Chromatin	染色质	0.00000	`XP_057764534.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:6423199`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B112,C54
`Chr5:6423417`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B106,B112,B137
`Chr5:6423456`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B121,B4,B54
`Chr5:6423458`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr5:6423729`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B18,B78
`Chr5:6424220`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A5,B98
`Chr5:6424236`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C59
`Chr5:6424324`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C58
`Chr5:6425025`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B104,B111,B93,D11
`Chr5:6425158`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B131,B41,D10
`Chr5:6425190`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B131,B41,D10
`Chr5:6425490`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B90,B92

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764534.1

732 aa

366

732

LRRNT_2

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 32-70 aa PF00560 LRR_1 101-117 aa PF00560 LRR_1 121-142 aa PF00560 LRR_1 144-164 aa PF13855 LRR_8 144-203 aa PF00560 LRR_1 169-190 aa PF00069 Pkinase 454-721 aa PF07714 PK_Tyr_Ser-Thr 456-722 aa

XP_057764535.1

732 aa

366

732

LRRNT_2

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

XP_057764536.1

732 aa

366

732

LRRNT_2

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

XP_057764537.1

732 aa

366

732

LRRNT_2

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764534.1`	Pfam	`PF08263`	LRRNT_2	Family	32	70	0.00016	22.6	Leucine rich repeat N-terminal domain
`XP_057764534.1`	Pfam	`PF00560`	LRR_1	Repeat	101	117	1.1e-12	46.1	Leucine Rich Repeat
`XP_057764534.1`	Pfam	`PF00560`	LRR_1	Repeat	121	142	1.1e-12	46.1	Leucine Rich Repeat
`XP_057764534.1`	Pfam	`PF00560`	LRR_1	Repeat	144	164	1.1e-12	46.1	Leucine Rich Repeat
`XP_057764534.1`	Pfam	`PF13855`	LRR_8	Repeat	144	203	1.6e-11	44.5	Leucine rich repeat
`XP_057764534.1`	Pfam	`PF00560`	LRR_1	Repeat	169	190	1.1e-12	46.1	Leucine Rich Repeat
`XP_057764534.1`	Pfam	`PF00069`	Pkinase	Domain	454	721	5.8e-35	121.7	Protein kinase domain
`XP_057764534.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	456	722	7.8e-37	127.7	Protein tyrosine and serine/threonine kinase
`XP_057764535.1`	Pfam	`PF08263`	LRRNT_2	Family	32	70	0.00016	22.6	Leucine rich repeat N-terminal domain
`XP_057764535.1`	Pfam	`PF00560`	LRR_1	Repeat	101	117	1.1e-12	46.1	Leucine Rich Repeat
`XP_057764535.1`	Pfam	`PF00560`	LRR_1	Repeat	121	142	1.1e-12	46.1	Leucine Rich Repeat
`XP_057764535.1`	Pfam	`PF00560`	LRR_1	Repeat	144	164	1.1e-12	46.1	Leucine Rich Repeat
`XP_057764535.1`	Pfam	`PF13855`	LRR_8	Repeat	144	203	1.6e-11	44.5	Leucine rich repeat
`XP_057764535.1`	Pfam	`PF00560`	LRR_1	Repeat	169	190	1.1e-12	46.1	Leucine Rich Repeat
`XP_057764535.1`	Pfam	`PF00069`	Pkinase	Domain	454	721	5.8e-35	121.7	Protein kinase domain
`XP_057764535.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	456	722	7.8e-37	127.7	Protein tyrosine and serine/threonine kinase
`XP_057764536.1`	Pfam	`PF08263`	LRRNT_2	Family	32	70	0.00016	22.6	Leucine rich repeat N-terminal domain
`XP_057764536.1`	Pfam	`PF00560`	LRR_1	Repeat	101	117	1.1e-12	46.1	Leucine Rich Repeat
`XP_057764536.1`	Pfam	`PF00560`	LRR_1	Repeat	121	142	1.1e-12	46.1	Leucine Rich Repeat
`XP_057764536.1`	Pfam	`PF00560`	LRR_1	Repeat	144	164	1.1e-12	46.1	Leucine Rich Repeat
`XP_057764536.1`	Pfam	`PF13855`	LRR_8	Repeat	144	203	1.6e-11	44.5	Leucine rich repeat
`XP_057764536.1`	Pfam	`PF00560`	LRR_1	Repeat	169	190	1.1e-12	46.1	Leucine Rich Repeat
`XP_057764536.1`	Pfam	`PF00069`	Pkinase	Domain	454	721	5.8e-35	121.7	Protein kinase domain
`XP_057764536.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	456	722	7.8e-37	127.7	Protein tyrosine and serine/threonine kinase
`XP_057764537.1`	Pfam	`PF08263`	LRRNT_2	Family	32	70	0.00016	22.6	Leucine rich repeat N-terminal domain
`XP_057764537.1`	Pfam	`PF00560`	LRR_1	Repeat	101	117	1.1e-12	46.1	Leucine Rich Repeat
`XP_057764537.1`	Pfam	`PF00560`	LRR_1	Repeat	121	142	1.1e-12	46.1	Leucine Rich Repeat
`XP_057764537.1`	Pfam	`PF00560`	LRR_1	Repeat	144	164	1.1e-12	46.1	Leucine Rich Repeat
`XP_057764537.1`	Pfam	`PF13855`	LRR_8	Repeat	144	203	1.6e-11	44.5	Leucine rich repeat
`XP_057764537.1`	Pfam	`PF00560`	LRR_1	Repeat	169	190	1.1e-12	46.1	Leucine Rich Repeat
`XP_057764537.1`	Pfam	`PF00069`	Pkinase	Domain	454	721	5.8e-35	121.7	Protein kinase domain
`XP_057764537.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	456	722	7.8e-37	127.7	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057908554.1
ATAATTTTGTATACGATCATATTATAGCAATCTTTATCTCCTGGGAGGTGATATAGCTGTATGTTCTTGAGAGAAAAGATAAGCACCTGAAAATATAAATGCCTTTTTTAATTTCTCTGAGATAAAGCAAGAAGCAGAAGCAAACCCACTATTTTTAACCGACTGTTTGGATATCCCATTCATTCATTCATTCTTTCTTTCTTTCCCCTTCAACCCGCAGTATTGTTATTTGTTGCTTTGTTTAGTTTGAAAAGAAAGAG...

XM_057908552.1
ATAATTTTGTATACGATCATATTATAGCAATCTTTATCTCCTGGGAGGTGATATAGCTGTATGTTCTTGAGAGAAAAGATAAGCACCTGAAAATATAAATGCCTTTTTTAATTTCTCTGAGATAAAGCAAGAAGCAGAAGCAAACCCACTATTTTTAACCGACTGTTTGGATATCCCATTCATTCATTCATTCTTTCTTTCTTTCCCCTTCAACCCGCAGTATTGTTATTTGTTGCTTTGTTTAGTTTGAAAAGAAAGAG...

CDS

4 records

下载 CDS FASTA

LOC130985534
ATGATGGCTCGTTCGTTTCTGAAGATTGATGAGTGGGTTCTCTGCCTTTTCATACTTCTATCTGCAGTTCCCTTCCACCATGGATTTACAGATCCTCGTGATGTTTTTGCAATAACTCAGTTACATGCTTCTCTGGGCCTCCCGTTGCTTCCTGGATGGATTCCGGGAGGAGATCCCTGTGGGCCGCCTAGTTGGCAAGGGGTGGAATGTGTGAATGCTAATATAACTGCACTAAAGCTCAGTAGCGCAAATTTGGGAGG...

Protein

4 records

下载 Protein FASTA

XP_057764534.1
MMARSFLKIDEWVLCLFILLSAVPFHHGFTDPRDVFAITQLHASLGLPLLPGWIPGGDPCGPPSWQGVECVNANITALKLSSANLGGELPEDLGMFASIIDIDLSNNHIGGSIPTSLPITLQNFFLSDNQFTGDIPNSLSSLGQLKSLSLNNNQLTGAIPDAFEPITGLINMDLSWNSLTGVLPPSMRSLLSLTSLHLQNNQLIGVLDVIQDLPLTDLNVENNLFSGPIPGKLLNIPSFRRAGNPFNTTILPSPPASPPV...

XP_057764535.1
MMARSFLKIDEWVLCLFILLSAVPFHHGFTDPRDVFAITQLHASLGLPLLPGWIPGGDPCGPPSWQGVECVNANITALKLSSANLGGELPEDLGMFASIIDIDLSNNHIGGSIPTSLPITLQNFFLSDNQFTGDIPNSLSSLGQLKSLSLNNNQLTGAIPDAFEPITGLINMDLSWNSLTGVLPPSMRSLLSLTSLHLQNNQLIGVLDVIQDLPLTDLNVENNLFSGPIPGKLLNIPSFRRAGNPFNTTILPSPPASPPV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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