当前解析结果
SmilChr05G000827| 统一新 Gene ID | SmilChr05G000827 |
|---|---|
| 名称 | SmilChr05G000827 |
| 描述 | caffeoylshikimate esterase |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 6485898 - 6487009 / - |
| NCBI Gene ID | LOC130985541 |
|---|---|
| GeneID | 130985541 |
| locus_tag | - |
| NCBI Name | LOC130985541 |
| 原始查询 | SmilChr05G000827 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | caffeoylshikimate esterase |
| 产物 | caffeoylshikimate esterase |
| Arabidopsis | AT1G11090 (AT1G11090)alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837650] identity=63.5; qcov=0.978; evalue=1.12e-144; confidence=high |
| Rice | Os07g0565700 (OJ1773_H01.113)- identity=59.5; qcov=1.01; evalue=2.17e-136; confidence=high |
| GO | GO:0016020 (membrane); GO:0016298 (lipase activity) |
| KEGG | smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00326 (Peptidase_S9); PF00561 (Abhydrolase_1); PF00756 (Esterase); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985541 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057764547.1 |
| 2 | Lipid droplet | 脂滴 | 0.60000 | XP_057764547.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057764547.1 |
| 4 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057764547.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057764547.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:6486084 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B41,B73,B82,D11 |
Chr5:6486184 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr5:6486192 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:6486414 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A5,B98 |
Chr5:6486456 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B41,B73,B82 |
Chr5:6486573 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B113,B33,C75 |
Chr5:6486642 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B109,C12,D8 |
Chr5:6486681 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A2,A24,D3 |
Chr5:6486768 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C17,C33 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764547.1PF12146
Hydrolase_4 53-290 aa
PF00561
Abhydrolase_1 57-168 aa
PF12697
Abhydrolase_6 60-291 aa
PF00326
Peptidase_S9 70-166 aa
PF00756
Esterase 120-177 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764547.1 |
Pfam | PF12146 |
Hydrolase_4 | Domain | 53 | 290 | 2.5e-54 | 184.9 | Serine aminopeptidase, S33 |
XP_057764547.1 |
Pfam | PF00561 |
Abhydrolase_1 | Domain | 57 | 168 | 8.7e-13 | 49.2 | alpha/beta hydrolase fold |
XP_057764547.1 |
Pfam | PF12697 |
Abhydrolase_6 | Domain | 60 | 291 | 2.2e-11 | 45.5 | Alpha/beta hydrolase family |
XP_057764547.1 |
Pfam | PF00326 |
Peptidase_S9 | Domain | 70 | 166 | 8.2e-10 | 39.3 | Prolyl oligopeptidase family |
XP_057764547.1 |
Pfam | PF00756 |
Esterase | Domain | 120 | 177 | 5.3e-05 | 23.8 | Putative esterase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。