Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000838`

染色体: Chr05 坐标: 6614929-6633581 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000838`
名称	SmilChr05G000838
描述	protein MOR1
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	6614929 - 6633581 / `+`

ID 对照

NCBI Gene ID	`LOC130985549`
GeneID	`130985549`
locus_tag	`-`
NCBI Name	`LOC130985549`
原始查询	`SmilChr05G000838`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein MOR1
产物	protein MOR1
Arabidopsis	`AT2G35630` (MOR1) ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818131] identity=73.2; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0816400` (MOR1) - identity=71.4; qcov=1.01; evalue=0; confidence=high
GO	GO:0000776 (kinetochore); GO:0000922 (spindle pole); GO:0005813 (centrosome); GO:0007052 (mitotic spindle organization); GO:0030951 (establishment or maintenance of microtubule cytoskeleton polarity); GO:0035371 (microtubule plus-end); GO:0046785 (microtubule polymerization); GO:0051010 (microtubule plus-end binding); GO:0061863 (microtubule plus end polymerase activity)
KEGG	-
Pfam	PF02985 (HEAT); PF12348 (CLASP_N); PF21041 (XMAP215_CLASP_TOG)
InterPro	-
eggNOG	-
NR	GeneID:130985549

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057764557.1`
2	Phragmoplast	Phragmoplast	0.80000	`XP_057764557.1`
3	Spindle	Spindle	0.80000	`XP_057764557.1`
4	Spindle pole	Spindle pole	0.80000	`XP_057764557.1`
5	Cytosol	细胞质基质	0.60000	`XP_057764557.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:6615200`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr5:6615736`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B129,C11,C69,D5
`Chr5:6615850`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B107,B87,B88
`Chr5:6615851`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B107,B87,B88
`Chr5:6618152`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr5:6618202`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C33
`Chr5:6618202`	`TC`	`T`	1bp_deletion	CDS_variant	1	C33
`Chr5:6618490`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B24,B40,B93,C53
`Chr5:6618502`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B10,B134,B81,C6
`Chr5:6618910`	`G`	`GT`	1bp_insertion	stop_gained,frameshift_variant	4	A11,B120,B40,C25
`Chr5:6618910`	`G`	`GT`	1bp_insertion	CDS_variant	4	A11,B120,B40,C25
`Chr5:6620101`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,B2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764557.1

2015 aa

1008

2015

XMAP215_CLASP_TOG

CLASP_N

HEAT

XMAP215_CLASP_TOG

PF21041 XMAP215_CLASP_TOG 11-223 aa PF21041 XMAP215_CLASP_TOG 297-499 aa PF12348 CLASP_N 298-479 aa PF02985 HEAT 447-474 aa PF21041 XMAP215_CLASP_TOG 609-813 aa PF21041 XMAP215_CLASP_TOG 1188-1396 aa

XP_057764558.1

2014 aa

1007

2014

XMAP215_CLASP_TOG

CLASP_N

HEAT

XMAP215_CLASP_TOG

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764557.1`	Pfam	`PF21041`	XMAP215_CLASP_TOG	Repeat	11	223	1e-102	343.5	XMAP215/Dis1/CLASP, TOG domain
`XP_057764557.1`	Pfam	`PF21041`	XMAP215_CLASP_TOG	Repeat	297	499	1e-102	343.5	XMAP215/Dis1/CLASP, TOG domain
`XP_057764557.1`	Pfam	`PF12348`	CLASP_N	Repeat	298	479	1.1e-18	68.3	CLASP N terminal
`XP_057764557.1`	Pfam	`PF02985`	HEAT	Repeat	447	474	1e-18	66.4	HEAT repeat
`XP_057764557.1`	Pfam	`PF21041`	XMAP215_CLASP_TOG	Repeat	609	813	1e-102	343.5	XMAP215/Dis1/CLASP, TOG domain
`XP_057764557.1`	Pfam	`PF21041`	XMAP215_CLASP_TOG	Repeat	1188	1396	1e-102	343.5	XMAP215/Dis1/CLASP, TOG domain
`XP_057764558.1`	Pfam	`PF21041`	XMAP215_CLASP_TOG	Repeat	11	223	1e-102	343.5	XMAP215/Dis1/CLASP, TOG domain
`XP_057764558.1`	Pfam	`PF21041`	XMAP215_CLASP_TOG	Repeat	297	499	1e-102	343.5	XMAP215/Dis1/CLASP, TOG domain
`XP_057764558.1`	Pfam	`PF12348`	CLASP_N	Repeat	298	479	1.1e-18	68.3	CLASP N terminal
`XP_057764558.1`	Pfam	`PF02985`	HEAT	Repeat	447	474	9.9e-19	66.4	HEAT repeat
`XP_057764558.1`	Pfam	`PF21041`	XMAP215_CLASP_TOG	Repeat	609	813	1e-102	343.5	XMAP215/Dis1/CLASP, TOG domain
`XP_057764558.1`	Pfam	`PF21041`	XMAP215_CLASP_TOG	Repeat	1188	1396	1e-102	343.5	XMAP215/Dis1/CLASP, TOG domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908574.1
GTTCCTTTTTTTTTTTGAATGTGAGAGAGAAGTACTAGATTTGTCGTACGCACCCCACCCCCCTCCCTGCCTCTCACTCAACCCTCGAATTCGAGACTCGCCGGCACTCGGCTGAGTGGTAATTTAAGCGCCGGAGATTCCAACGGAGAAATCACGCCGACGGCTTTGTCAGTCAGTGCATTAGCATCGCCAGATTCGGTAGAGGTATTATTCGTCGGTAAATATAGGAAATGTCGGAGGATGAGAAGTTGTTGAAGGAG...

XM_057908575.1
GTTCCTTTTTTTTTTTGAATGTGAGAGAGAAGTACTAGATTTGTCGTACGCACCCCACCCCCCTCCCTGCCTCTCACTCAACCCTCGAATTCGAGACTCGCCGGCACTCGGCTGAGTGGTAATTTAAGCGCCGGAGATTCCAACGGAGAAATCACGCCGACGGCTTTGTCAGTCAGTGCATTAGCATCGCCAGATTCGGTAGAGGTATTATTCGTCGGTAAATATAGGAAATGTCGGAGGATGAGAAGTTGTTGAAGGAG...

CDS

2 records

下载 CDS FASTA

LOC130985549
ATGTCGGAGGATGAGAAGTTGTTGAAGGAGGCGAAGAAATTGCCGTGGGAGGACCGGTTGGCGCACAAGAATTGGAAAGTGCGAAATGACGCGAATATCGATTTGGCGGCCGTTTGCGACGGCATCACCGATCCTAAGGACCCGCGCCTTCGTGAATTCGGTCCTTTTTTCAGGAAGGCGGTGGCTGATTCCAATGCACCGGTGCAGGAGAAGGCTCTGGATGCGCTCATTGCATTTTTGAGAGCTGCAGATGCTGATGC...

Protein

2 records

下载 Protein FASTA

XP_057764557.1
MSEDEKLLKEAKKLPWEDRLAHKNWKVRNDANIDLAAVCDGITDPKDPRLREFGPFFRKAVADSNAPVQEKALDALIAFLRAADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQMSFMLWVELEAVEAFLDAMEKAIKNKVAKAVVPAIDVMFQALSEFGSKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKSILFEKMRDTMKKELEAELGNVAGTAKPTRKIRSEQDKEPEPEAVSEAVGSVPTE...

XP_057764558.1
MSEDEKLLKEAKKLPWEDRLAHKNWKVRNDANIDLAAVCDGITDPKDPRLREFGPFFRKAVADSNAPVQEKALDALIAFLRAADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQMSFMLWVELEAVEAFLDAMEKAIKNKVAKAVVPAIDVMFQALSEFGSKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKSILFEKMRDTMKKELEAELGNVAGTAKPTRKIRSEQDKEPEPEAVSEAVGSVPTE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器