当前解析结果
SmilChr05G000840| 统一新 Gene ID | SmilChr05G000840 |
|---|---|
| 名称 | SmilChr05G000840 |
| 描述 | uncharacterized SmilChr05G000840 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 6645151 - 6651775 / - |
| NCBI Gene ID | LOC130985551 |
|---|---|
| GeneID | 130985551 |
| locus_tag | - |
| NCBI Name | LOC130985551 |
| 原始查询 | SmilChr05G000840 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | proline-rich spliceosome-associated (PSP) family protein [Source:NCBI gene (formerly Entrezgene);Acc:828253]; symbol=AT4G21660; hit=AT4G21660; species=arabidopsis; confidence=high |
| 产物 | proline-rich spliceosome-associated (PSP) family protein [Source:NCBI gene (formerly Entrezgene);Acc:828253]; symbol=AT4G21660; hit=AT4G21660; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G21660 (AT4G21660)proline-rich spliceosome-associated (PSP) family protein [Source:NCBI gene (formerly Entrezgene);Acc:828253] identity=74.3; qcov=0.966; evalue=0; confidence=high |
| Rice | Os02g0827300- identity=79.9; qcov=0.847; evalue=0; confidence=high |
| GO | GO:0000398 (mRNA splicing, via spliceosome); GO:0005634 (nucleus); GO:0005684 (U2-type spliceosomal complex); GO:0005686 (U2 snRNP); GO:0005689 (U12-type spliceosomal complex); GO:0071011 (precatalytic spliceosome); GO:0071013 (catalytic step 2 spliceosome) |
| KEGG | smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF04037 (DUF382); PF04046 (PSP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985551 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057764560.1 |
| 2 | Nucleolus | 核仁 | 0.60000 | XP_057764560.1 |
| 3 | Nucleoplasm | 核质 | 0.20000 | XP_057764560.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057764560.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057764560.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:6645424 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B73,C58 |
Chr5:6645734 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C18,C48 |
Chr5:6646343 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B138,B17,B71,B78,C23 |
Chr5:6646382 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B107,B87,B88,C5 |
Chr5:6646997 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr5:6650110 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B33,B68,C48 |
Chr5:6650114 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A11,B68,C48 |
Chr5:6650303 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,B33,B68,C48 |
Chr5:6651427 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C13,C41 |
Chr5:6651498 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B105,B13,B16,C30,D4 |
Chr5:6651538 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr5:6651555 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B68,C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764560.1PF04037
DUF382 177-302 aa
PF04046
PSP 311-356 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764560.1 |
Pfam | PF04037 |
DUF382 | Family | 177 | 302 | 3.3e-60 | 202.5 | Domain of unknown function (DUF382) |
XP_057764560.1 |
Pfam | PF04046 |
PSP | Family | 311 | 356 | 1.3e-23 | 83.1 | PSP |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。