Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000842`

染色体: Chr05 坐标: 6659247-6660789 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000842`
名称	SmilChr05G000842
描述	uncharacterized SmilChr05G000842
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	6659247 - 6660789 / `-`

ID 对照

NCBI Gene ID	`LOC130985554`
GeneID	`130985554`
locus_tag	`-`
NCBI Name	`LOC130985554`
原始查询	`SmilChr05G000842`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha 1,4-glycosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:818393]; symbol=AT2G38150; hit=AT2G38150; species=arabidopsis; confidence=medium
产物	alpha 1,4-glycosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:818393]; symbol=AT2G38150; hit=AT2G38150; species=arabidopsis; confidence=medium
Arabidopsis	`AT2G38150` (AT2G38150) alpha 1,4-glycosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:818393] identity=43.3; qcov=0.954; evalue=4.61e-114; confidence=medium
Rice	`Os04g0529700` - identity=53; qcov=0.738; evalue=3.53e-106; confidence=high
GO	-
KEGG	smil00601 (Glycosphingolipid biosynthesis - lacto and neolacto series - Salvia miltiorrhiza (redroot sage)); smil00603 (Glycosphingolipid biosynthesis - globo and isoglobo series - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF04488 (Gly_transf_sug); PF04572 (Gb3_synth)
InterPro	-
eggNOG	-
NR	GeneID:130985554

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057764564.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057764564.1`
3	Nucleus	细胞核	0.00000	`XP_057764564.1`
4	Chromosome	染色体	0.00000	`XP_057764564.1`
5	Centromere	着丝粒	0.00000	`XP_057764564.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:6659427`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A10
`Chr5:6659477`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr5:6659559`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B100,B111,B99,C36,C87
`Chr5:6659879`	`TA`	`T`	1bp_deletion	frameshift_variant	1	B73
`Chr5:6659879`	`TA`	`T`	1bp_deletion	CDS_variant	1	B73
`Chr5:6659933`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B109,B136,B36,B37,C46
`Chr5:6660503`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B44,B82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764564.1

409 aa

204

409

Gly_transf_sug

Gb3_synth

PF04488 Gly_transf_sug 146-267 aa PF04572 Gb3_synth 285-399 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764564.1`	Pfam	`PF04488`	Gly_transf_sug	Family	146	267	2.3e-17	64.2	Glycosyltransferase sugar-binding region containing DXD motif
`XP_057764564.1`	Pfam	`PF04572`	Gb3_synth	Family	285	399	8e-26	91.4	Alpha 1,4-glycosyltransferase conserved region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057908581.1
ACAATAAACACCGACAATTTCTTTTCTGGGAAACTCTGTCTTCAATAAGTCCACAGCCATAACAGAATTCTCCACACACACACACACACACACACATACACACTCATTAATTCTACGTCGCATGGCATGACAACTAATGAAACCATTCTTCATTTGAGATGGAGAATATTACTACTTTCATGTCTCAGTTTCTTTTGATTTGGCAAAGAGGCAGGATGTCATTTTGTGCCTTTCTTTCTCTTTTTTTTCTCTGTCTATTA...

CDS

1 records

下载 CDS FASTA

LOC130985554
ATGGAGAATATTACTACTTTCATGTCTCAGTTTCTTTTGATTTGGCAAAGAGGCAGGATGTCATTTTGTGCCTTTCTTTCTCTTTTTTTTCTCTGTCTATTAGCCTACAACGGCGCCGCTATATTCTGCGTCAGCGTCCCTTTCCCGGGGAAAACTCCGCCGTTGCCGGAATATGTTCCTACTCAACGTCGTTCAGTCGGAAAAGCAAGCTCGAATATAAACTTGAGCACTCTTTTGCCTCTTCTGCATAAAAATCAAAA...

Protein

1 records

下载 Protein FASTA

XP_057764564.1
MENITTFMSQFLLIWQRGRMSFCAFLSLFFLCLLAYNGAAIFCVSVPFPGKTPPLPEYVPTQRRSVGKASSNINLSTLLPLLHKNQNRSTLHRPKTRKFEENVVRILRSEAVKKQFEVRVMKFFKTNSCKFRFFMTWISPVESFRDREVLSVESVFKTHPNGCLIIASNSLDSPSGRQILRPFSDKGFKVAAMTPDFTYLLRNTAAAAWYNRLKRGNVNPGEISLGQNLSNLLRIGLLYRFGGIYLDTDVLVLKSFGVLR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器