当前解析结果
SmilChr05G000884| 统一新 Gene ID | SmilChr05G000884 |
|---|---|
| 名称 | SmilChr05G000884 |
| 描述 | putative FBD-associated F-box protein At1g61330 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 6998900 - 7002020 / + |
| NCBI Gene ID | LOC131025464 |
|---|---|
| GeneID | 131025464 |
| locus_tag | - |
| NCBI Name | LOC131025464 |
| 原始查询 | SmilChr05G000884 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative FBD-associated F-box protein At1g61330 |
| 产物 | putative FBD-associated F-box protein At1g61330 |
| Arabidopsis | AT1G61330 (AT1G61330)FBD, F-box and Leucine Rich Repeat domains containing protein [Source:NCBI gene (formerly Entrezgene);Acc:842427] identity=29.1; qcov=0.917; evalue=2.38e-46; confidence=low |
| Rice | Os06g0139000- identity=25.7; qcov=0.656; evalue=8.5e-14; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF12937 (F-box-like); PF23622 (LRR_At1g61320_AtMIF1); PF24758 (LRR_At5g56370) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025464 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057811242.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057811242.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057811242.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057811242.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057811242.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:6998974 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A8,B136,B17,B54,C68 |
Chr5:6999000 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B131,B47,B57,C34 |
Chr5:6999011 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B131,B36,B47,B57,C34 |
Chr5:6999141 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr5:6999318 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:6999336 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,B132 |
Chr5:6999461 |
CG |
C |
1bp_deletion | frameshift_variant | 1 | B140 |
Chr5:6999461 |
CG |
C |
1bp_deletion | CDS_variant | 1 | B140 |
Chr5:6999558 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
Chr5:6999587 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B49,C25 |
Chr5:6999657 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr5:7001742 |
T |
TA |
1bp_insertion | stop_gained,frameshift_variant | 25 | A22,A6,B111,B117,B122,B132,B32,B34,B36,B45,B48,B5,B58,B74,B8,B89,C12,C15,C19,C41,C46,C55,C60,C76,C81 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811242.1PF12937
F-box-like 15-46 aa
PF00646
F-box 15-52 aa
PF23622
LRR_At1g61320_AtMIF1 79-411 aa
PF24758
LRR_At5g56370 105-240 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811242.1 |
Pfam | PF12937 |
F-box-like | Domain | 15 | 46 | 3.9e-07 | 30.4 | F-box-like |
XP_057811242.1 |
Pfam | PF00646 |
F-box | Domain | 15 | 52 | 3.7e-10 | 40.0 | F-box domain |
XP_057811242.1 |
Pfam | PF23622 |
LRR_At1g61320_AtMIF1 | Repeat | 79 | 411 | 7.5e-21 | 75.7 | At1g61320/AtMIF1, LRR domain |
XP_057811242.1 |
Pfam | PF24758 |
LRR_At5g56370 | Repeat | 105 | 240 | 3e-10 | 40.9 | FBD-associated F-box protein At5g56370, LRR repeats |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。