Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G000901

染色体: Chr05 坐标: 7127551-7132505 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G000901
名称SmilChr05G000901
描述uncharacterized SmilChr05G000901
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向7127551 - 7132505 / +

ID 对照

NCBI Gene IDLOC130985614
GeneID130985614
locus_tag-
NCBI NameLOC130985614
原始查询SmilChr05G000901

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837681]; symbol=AT1G11390; hit=AT1G11390; species=arabidopsis; confidence=high
产物Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837681]; symbol=AT1G11390; hit=AT1G11390; species=arabidopsis; confidence=high
ArabidopsisAT1G11390 (AT1G11390)
Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837681]
identity=64.3; qcov=1.02; evalue=0; confidence=high
RiceOs04g0660200
-
identity=67.7; qcov=0.901; evalue=0; confidence=high
GO-
KEGG-
PfamPF03109 (ABC1)
InterPro-
eggNOG-
NRGeneID:130985614

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057764664.1
2 Mitochondrion membrane 线粒体膜 1.00000 XP_057764664.1
3 Mitochondrion inner membrane 线粒体内膜 0.60000 XP_057764664.1
4 Chloroplast membrane 叶绿体膜 0.20000 XP_057764666.1
5 Nucleus 细胞核 0.00000 XP_057764664.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:7128329 G A EMS_canonical_SNV CDS_variant 3 B64,B66,B85
Chr5:7128579 C T EMS_canonical_SNV CDS_variant 3 B60,C13,C39
Chr5:7128657 G A EMS_canonical_SNV CDS_variant 1 C84
Chr5:7128662 C T EMS_canonical_SNV CDS_variant 2 A23,B67
Chr5:7128724 G A EMS_canonical_SNV CDS_variant 1 C33
Chr5:7129458 C T EMS_canonical_SNV CDS_variant 1 B88
Chr5:7130662 C T EMS_canonical_SNV CDS_variant 5 B65,B68,B82,C24,C35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057764664.1
629 aa
N
1
314
629
ABC1
C
PF03109 ABC1 254-519 aa
XP_057764665.1
629 aa
N
1
314
629
ABC1
C
PF03109 ABC1 254-519 aa
XP_057764666.1
626 aa
N
1
313
626
ABC1
C
PF03109 ABC1 251-516 aa
XP_057764667.1
626 aa
N
1
313
626
ABC1
C
PF03109 ABC1 251-516 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057764664.1 Pfam PF03109 ABC1 Domain 254 519 1.2e-46 159.6 ABC1 atypical kinase-like domain
XP_057764665.1 Pfam PF03109 ABC1 Domain 254 519 1.2e-46 159.6 ABC1 atypical kinase-like domain
XP_057764666.1 Pfam PF03109 ABC1 Domain 251 516 1.2e-46 159.6 ABC1 atypical kinase-like domain
XP_057764667.1 Pfam PF03109 ABC1 Domain 251 516 1.2e-46 159.6 ABC1 atypical kinase-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057908682.1
TTTTATTAGTATAAGATAATTACAATTATTTTTCAATGGCAAATTAGCGAAACATAGGGCATGTGGATCTAACCTCCTCAACACAATATCGTTCTTCGTCTTCATCATCACAATCATTTCATCTTTCGCCGCATGCGCCTAGGGTGTGATTCGTATGGTCGAATCCTTCATTAATCGTTAGAAGATGCTCGTCGAAAACTTACTACGCCTCATGCGCGCGTTATTCTATCAGCGTTTCTTTGCTGCACAGTTTTCGCTAT...
XM_057908684.1
TTTTATTAGTATAAGATAATTACAATTATTTTTCAATGGCAAATTAGCGAAACATAGGGCATGTGGATCTAACCTCCTCAACACAATATCGTTCTTCGTCTTCATCATCACAATCATTTCATCTTTCGCCGCATGCGCCTAGGGTGTGATTCGTATGGTCGAATCCTTCATTAATCGTTAGAAGATGCTCGTCGAAAACTTACTACGCCTCATGCGCGCGTTATTCTATCAGCGTTTCTTTGCTGCACAGTTTTCGCTAT...

CDS

4 records

下载 CDS FASTA
LOC130985614
ATGTCAAGATGTGGCAGATTGTTCGGGAAAGCATCATCGTCTCTCCGGACTTGTCAATCTGGCATGAATGCACATGGGTCAGCCTATGGAGCACCTCTCCGACTCAAGATATGTTCTTCTCGATACACATTGTACTTCCATTACTTGTTTCGCAGCAGAAGACGTACTTGGGGTGCAACTTGTGAAAATGGAAAAGGTTTCTGTAATAGTTACTCAAGGAGGTATTCAACAAGTCCAGCTCGCAATACCGTAGCTTATCA...
LOC130985614
ATGTCAAGATGTGGCAGATTGTTCGGGAAAGCATCATCGTCTCTCCGGACTTGTCAATCTGGCATGAATGCACATGGGTCAGCCTATGGAGCACCTCTCCGACTCAAGATATGTTCTTCTCGATACACATTGTACTTCCATTACTTGTTTCGCAGCAGAAGACGTACTTGGGGTGCAACTTGTGAAAATGGAAAAGGTTTCTGTAATAGTTACTCAAGGAGGTATTCAACAAGTCCAGCTCGCAATACCGTAGCTTATCA...

Protein

4 records

下载 Protein FASTA
XP_057764664.1
MSRCGRLFGKASSSLRTCQSGMNAHGSAYGAPLRLKICSSRYTLYFHYLFRSRRRTWGATCENGKGFCNSYSRRYSTSPARNTVAYHTRIVWKNMAKKSIQNAQTHLSIEKIAQAVSLGFSYSYMVVPSIFALVCGTHLAWAEEAAPTTNTVYDPRNTLYMHARDTHSCVTGLIFSIFEGIFMLIRTFYLAVLFTPSISMAPFADSLGPHFRRLWLQVVHLTLERAGPAFIKWGQWAATRPDLFPKDLCTELSKLHMKAP...
XP_057764665.1
MSRCGRLFGKASSSLRTCQSGMNAHGSAYGAPLRLKICSSRYTLYFHYLFRSRRRTWGATCENGKGFCNSYSRRYSTSPARNTVAYHTRIVWKNMAKKSIQNAQTHLSIEKIAQAVSLGFSYSYMVVPSIFALVCGTHLAWAEEAAPTTNTVYDPRNTLYMHARDTHSCVTGLIFSIFEGIFMLIRTFYLAVLFTPSISMAPFADSLGPHFRRLWLQVVHLTLERAGPAFIKWGQWAATRPDLFPKDLCTELSKLHMKAP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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