当前解析结果
SmilChr05G000901| 统一新 Gene ID | SmilChr05G000901 |
|---|---|
| 名称 | SmilChr05G000901 |
| 描述 | uncharacterized SmilChr05G000901 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 7127551 - 7132505 / + |
| NCBI Gene ID | LOC130985614 |
|---|---|
| GeneID | 130985614 |
| locus_tag | - |
| NCBI Name | LOC130985614 |
| 原始查询 | SmilChr05G000901 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837681]; symbol=AT1G11390; hit=AT1G11390; species=arabidopsis; confidence=high |
| 产物 | Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837681]; symbol=AT1G11390; hit=AT1G11390; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G11390 (AT1G11390)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837681] identity=64.3; qcov=1.02; evalue=0; confidence=high |
| Rice | Os04g0660200- identity=67.7; qcov=0.901; evalue=0; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF03109 (ABC1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985614 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057764664.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057764664.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 0.60000 | XP_057764664.1 |
| 4 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057764666.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057764664.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:7128329 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B64,B66,B85 |
Chr5:7128579 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B60,C13,C39 |
Chr5:7128657 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr5:7128662 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A23,B67 |
Chr5:7128724 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C33 |
Chr5:7129458 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr5:7130662 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B65,B68,B82,C24,C35 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057764664.1PF03109
ABC1 254-519 aa
XP_057764665.1PF03109
ABC1 254-519 aa
XP_057764666.1PF03109
ABC1 251-516 aa
XP_057764667.1PF03109
ABC1 251-516 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764664.1 |
Pfam | PF03109 |
ABC1 | Domain | 254 | 519 | 1.2e-46 | 159.6 | ABC1 atypical kinase-like domain |
XP_057764665.1 |
Pfam | PF03109 |
ABC1 | Domain | 254 | 519 | 1.2e-46 | 159.6 | ABC1 atypical kinase-like domain |
XP_057764666.1 |
Pfam | PF03109 |
ABC1 | Domain | 251 | 516 | 1.2e-46 | 159.6 | ABC1 atypical kinase-like domain |
XP_057764667.1 |
Pfam | PF03109 |
ABC1 | Domain | 251 | 516 | 1.2e-46 | 159.6 | ABC1 atypical kinase-like domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。