Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000913`

染色体: Chr05 坐标: 7236666-7240512 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000913`
名称	SmilChr05G000913
描述	protein RDM16-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	7236666 - 7240512 / `-`

ID 对照

NCBI Gene ID	`LOC130985632`
GeneID	`130985632`
locus_tag	`-`
NCBI Name	`LOC130985632`
原始查询	`SmilChr05G000913`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein RDM16-like
产物	protein RDM16-like
Arabidopsis	`AT1G28060` (AT1G28060) Pre-mRNA-splicing factor 3 [Source:NCBI gene (formerly Entrezgene);Acc:839699] identity=65.4; qcov=1.01; evalue=0; confidence=high
Rice	`Os09g0249600` - identity=67.4; qcov=0.944; evalue=0; confidence=high
GO	GO:0000398 (mRNA splicing, via spliceosome); GO:0046540 (U4/U6 x U5 tri-snRNP complex)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF06544 (Prp3_C); PF08572 (PRP3)
InterPro	-
eggNOG	-
NR	GeneID:130985632

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057764686.1`
2	Nucleoplasm	核质	1.00000	`XP_057764686.1`
3	Nuclear speckle	核斑点	0.60000	`XP_057764686.1`
4	Cytoplasm	细胞质	0.60000	`XP_057764689.1`
5	Nucleolar fibrillar center	Nucleolar fibrillar center	0.40000	`XP_057764689.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:7238328`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A6,B104,B5,C13,C83
`Chr5:7238460`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B92,C64
`Chr5:7238727`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B98
`Chr5:7238977`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,B39,C59,C79
`Chr5:7239017`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C68
`Chr5:7240051`	`AC`	`A`	1bp_deletion	frameshift_variant	1	A13
`Chr5:7240051`	`AC`	`A`	1bp_deletion	CDS_variant	1	A13
`Chr5:7240054`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764686.1

715 aa

358

715

PRP3

Prp3_C

PF08572 PRP3 328-557 aa PF06544 Prp3_C 581-706 aa

XP_057764687.1

614 aa

307

614

PRP3

Prp3_C

PF08572 PRP3 227-456 aa PF06544 Prp3_C 480-605 aa

XP_057764688.1

610 aa

305

610

PRP3

Prp3_C

PF08572 PRP3 223-452 aa PF06544 Prp3_C 476-601 aa

XP_057764689.1

514 aa

257

514

PRP3

Prp3_C

PF08572 PRP3 127-356 aa PF06544 Prp3_C 380-505 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764686.1`	Pfam	`PF08572`	PRP3	Domain	328	557	3.4e-64	217.2	pre-mRNA processing factor 3 domain
`XP_057764686.1`	Pfam	`PF06544`	Prp3_C	Domain	581	706	1.6e-42	145.6	Small nuclear ribonucleoprotein Prp3, C-terminal domain
`XP_057764687.1`	Pfam	`PF08572`	PRP3	Domain	227	456	1.4e-64	218.5	pre-mRNA processing factor 3 domain
`XP_057764687.1`	Pfam	`PF06544`	Prp3_C	Domain	480	605	5.7e-43	147.0	Small nuclear ribonucleoprotein Prp3, C-terminal domain
`XP_057764688.1`	Pfam	`PF08572`	PRP3	Domain	223	452	1.4e-64	218.5	pre-mRNA processing factor 3 domain
`XP_057764688.1`	Pfam	`PF06544`	Prp3_C	Domain	476	601	5.7e-43	147.0	Small nuclear ribonucleoprotein Prp3, C-terminal domain
`XP_057764689.1`	Pfam	`PF08572`	PRP3	Domain	127	356	1.2e-64	218.7	pre-mRNA processing factor 3 domain
`XP_057764689.1`	Pfam	`PF06544`	Prp3_C	Domain	380	505	7.8e-43	146.6	Small nuclear ribonucleoprotein Prp3, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057908703.1
TCTTCCATTAACTCTTTAAATTAACTTGGGCCCAGCCTTGACTTGAGGCCCAACTTGAGCCCTTATTTCTTCTCTGAGTTCTCTGTCGTCTCTCGTTAGTCGTTTCTCATTGTATACTAACAGAAATCATCTTCTATCTTACAAATTTCACCGCCGCCTTCCTCCTTCGGCGACATCAGCCACTGCAGGTCATCGCCACGTCCACCACCACACATACCCCATCATGGATAAAGAAGTTCCGAGCAATAAACAGAGAGAAT...

XM_057908705.1
AAATTAACTTGGGCCCAGCCTTGACTTGAGGCCCAACTTGAGCCCTTATTTCTTCTCTGAGTTCTCTGTCGTCTCTCGTTAGTCGTTTCTCATTGTATACTAACAGAAATCATCTTCTATCTTACAAATTTCACCGCCGCCTTCCTCCTTCGGCGACATCAGCCACTGCAGGTCATCGCCACGTCCACCACCACACATACCCCATCATGGATAAAGAAGTTCCGAGCAATAAACAGAGAGAATCCGATGGCCGTCGGCGC...

CDS

4 records

下载 CDS FASTA

LOC130985632
ATGGATAAAGAAGTTCCGAGCAATAAACAGAGAGAATCCGATGGCCGTCGGCGCAGGTCCGAATCCAGAGCCAGGGATTGGGATGCGCGCAGCCAGACCTCCCATGAGAGGTCCAATTCTGTTGAGCGAAAGAAGAGGAAGTATAAGGGGGAGAGGGAGGAGATGGATCGAGATGTAAATGAGAGGAAGAAAAGGAAGGAGATGAGTGAGAATGAGGAGAGGAGCAAGAGAACTAGGGTTTATGAAGACAATCAGAGGGA...

LOC130985632
ATGGGTGAAGCACGAGCCGCGCAATATATATTCTTCTTGCAGGAGGTTGCAACTAGACCAGTTGCCGGCTCAAATGGGGGCTTGTCCCGTGATACTTTAGCCAAAGCTAAGTTAGCTCTTCAAAAGCAGAAAGAGCTTGCAGAGAGGATGAAGAAAATTTCTTCATTGAACAGGAACAGAGATGCGAGCTCAACTGAAGTGGGTAATCAAAGAGTGGGTGATAAAGTGGGAGCGAAAACTTCTTCCTCAGGCATACGCCC...

Protein

4 records

下载 Protein FASTA

XP_057764686.1
MDKEVPSNKQRESDGRRRRSESRARDWDARSQTSHERSNSVERKKRKYKGEREEMDRDVNERKKRKEMSENEERSKRTRVYEDNQRDMRRFEDVRAKEGDKDGDEFGWVKHEPRNEVATRPVAGSNGGLSRDTLAKAKLALQKQKELAERMKKISSLNRNRDASSTEVGNQRVGDKVGAKTSSSGIRPSRTSAPVSVPSEGMPSTPNPAAPLQAGVPEITGLTARNVESVKRAHELAAKMGFWQDPEFATVFNAFPGQLP...

XP_057764687.1
MGEARAAQYIFFLQEVATRPVAGSNGGLSRDTLAKAKLALQKQKELAERMKKISSLNRNRDASSTEVGNQRVGDKVGAKTSSSGIRPSRTSAPVSVPSEGMPSTPNPAAPLQAGVPEITGLTARNVESVKRAHELAAKMGFWQDPEFATVFNAFPGQLPPDISFQPKPSKVPVLRLDAMGREIDEKGKVVDIPKAQSLSTLKVNINKQKKDAFRILKPELDVDPETNPHFDPRVGINKDKLLRTKRPTMLFVEEGKWSKD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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