当前解析结果
SmilChr05G000919| 统一新 Gene ID | SmilChr05G000919 |
|---|---|
| 名称 | SmilChr05G000919 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 7295396 - 7298681 / + |
| NCBI Gene ID | LOC130985628 |
|---|---|
| GeneID | 130985628 |
| locus_tag | - |
| NCBI Name | LOC130985628 |
| 原始查询 | SmilChr05G000919 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 |
| Arabidopsis | AT1G11330 (AT1G11330)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837675] identity=46.1; qcov=0.993; evalue=0; confidence=high |
| Rice | Os04g0633200- identity=40.8; qcov=1.02; evalue=0; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985628 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057764682.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057764682.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057764682.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057764682.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057764682.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:7295531 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B128,B54 |
Chr5:7295539 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B128,B54 |
Chr5:7295732 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B115,C7 |
Chr5:7295754 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr5:7295813 |
G |
A |
EMS_canonical_SNV | stop_gained | 23 | A9,B101,B112,B115,B126,B15,B22,B28,B33,B37,B67,B78,B9,C2,C37,C38,C41,C47,C57,C61,C7,D3,D7 |
Chr5:7295850 |
CG |
C |
1bp_deletion | frameshift_variant | 1 | B132 |
Chr5:7295850 |
CG |
C |
1bp_deletion | CDS_variant | 1 | B132 |
Chr5:7296019 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B47,C2 |
Chr5:7296025 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B44,C40,C46,C75,C87 |
Chr5:7296080 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr5:7296088 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr5:7296136 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764682.1PF01453
B_lectin 79-181 aa
PF00954
S_locus_glycop 213-321 aa
PF08276
PAN_2 343-402 aa
PF00069
Pkinase 510-780 aa
PF07714
PK_Tyr_Ser-Thr 513-778 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764682.1 |
Pfam | PF01453 |
B_lectin | Repeat | 79 | 181 | 1.1e-32 | 113.3 | D-mannose binding lectin |
XP_057764682.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 213 | 321 | 6.1e-29 | 101.5 | S-locus glycoprotein domain |
XP_057764682.1 |
Pfam | PF08276 |
PAN_2 | Domain | 343 | 402 | 7.7e-14 | 52.3 | PAN-like domain |
XP_057764682.1 |
Pfam | PF00069 |
Pkinase | Domain | 510 | 780 | 3e-44 | 152.1 | Protein kinase domain |
XP_057764682.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 513 | 778 | 7.5e-44 | 150.7 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。