当前解析结果
SmilChr05G000923| 统一新 Gene ID | SmilChr05G000923 |
|---|---|
| 名称 | SmilChr05G000923 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 7336618 - 7339663 / + |
| NCBI Gene ID | LOC130985630 |
|---|---|
| GeneID | 130985630 |
| locus_tag | - |
| NCBI Name | LOC130985630 |
| 原始查询 | SmilChr05G000923 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 |
| Arabidopsis | AT1G11330 (AT1G11330)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837675] identity=45.8; qcov=1.01; evalue=0; confidence=high |
| Rice | Os04g0633200- identity=40; qcov=1.03; evalue=0; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985630 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057764684.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057764684.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057764684.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057764684.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057764684.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:7336888 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B129,C11,C69,D5 |
Chr5:7337191 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B64,C48 |
Chr5:7337263 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A3,C23 |
Chr5:7337553 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A16,B104,B136,B74 |
Chr5:7337983 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr5:7338187 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C55 |
Chr5:7338221 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr5:7338908 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C26,C52,C66 |
Chr5:7339384 |
A |
ACG |
2bp_insertion | frameshift_variant | 4 | B65,B68,C24,C35 |
Chr5:7339384 |
A |
ACG |
2bp_insertion | CDS_variant | 4 | B65,B68,C24,C35 |
Chr5:7339406 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B19,B89,C66,C76,D1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764684.1PF01453
B_lectin 73-175 aa
PF00954
S_locus_glycop 208-316 aa
PF08276
PAN_2 338-398 aa
PF00069
Pkinase 501-706 aa
PF07714
PK_Tyr_Ser-Thr 504-773 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764684.1 |
Pfam | PF01453 |
B_lectin | Repeat | 73 | 175 | 3e-33 | 115.1 | D-mannose binding lectin |
XP_057764684.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 208 | 316 | 3.1e-28 | 99.2 | S-locus glycoprotein domain |
XP_057764684.1 |
Pfam | PF08276 |
PAN_2 | Domain | 338 | 398 | 4.2e-14 | 53.1 | PAN-like domain |
XP_057764684.1 |
Pfam | PF00069 |
Pkinase | Domain | 501 | 706 | 2.1e-43 | 149.3 | Protein kinase domain |
XP_057764684.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 504 | 773 | 2.3e-45 | 155.6 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。