当前解析结果
SmilChr05G000926| 统一新 Gene ID | SmilChr05G000926 |
|---|---|
| 名称 | SmilChr05G000926 |
| 描述 | receptor-like serine/threonine-protein kinase SD1-8 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 7394641 - 7401660 / + |
| NCBI Gene ID | LOC130985626 |
|---|---|
| GeneID | 130985626 |
| locus_tag | - |
| NCBI Name | LOC130985626 |
| 原始查询 | SmilChr05G000926 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like serine/threonine-protein kinase SD1-8 |
| 产物 | receptor-like serine/threonine-protein kinase SD1-8 |
| Arabidopsis | AT4G21380 (RK3)receptor kinase 3 [Source:NCBI gene (formerly Entrezgene);Acc:827890] identity=56.7; qcov=0.994; evalue=0; confidence=high |
| Rice | Os03g0556600- identity=48.7; qcov=1.03; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2); PF11883 (DUF3403) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985626 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057764680.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057764680.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057764680.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057764680.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057764680.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:7395064 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr5:7395079 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C3 |
Chr5:7395266 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:7395409 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A13,B22,C69 |
Chr5:7395413 |
TGG |
T |
2bp_deletion | frameshift_variant | 1 | B75 |
Chr5:7395413 |
TGG |
T |
2bp_deletion | CDS_variant | 1 | B75 |
Chr5:7395421 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B3,C83 |
Chr5:7395451 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr5:7395562 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr5:7395616 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B106,B44 |
Chr5:7396198 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr5:7399709 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A9,B123,B133,C66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764680.1PF01453
B_lectin 75-177 aa
PF00954
S_locus_glycop 209-319 aa
PF08276
PAN_2 340-404 aa
PF00069
Pkinase 529-728 aa
PF07714
PK_Tyr_Ser-Thr 531-796 aa
PF11883
DUF3403 804-848 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764680.1 |
Pfam | PF01453 |
B_lectin | Repeat | 75 | 177 | 2.8e-37 | 128.1 | D-mannose binding lectin |
XP_057764680.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 209 | 319 | 3.7e-35 | 121.5 | S-locus glycoprotein domain |
XP_057764680.1 |
Pfam | PF08276 |
PAN_2 | Domain | 340 | 404 | 1.1e-19 | 71.0 | PAN-like domain |
XP_057764680.1 |
Pfam | PF00069 |
Pkinase | Domain | 529 | 728 | 4.4e-45 | 154.8 | Protein kinase domain |
XP_057764680.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 531 | 796 | 1.2e-49 | 169.7 | Protein tyrosine and serine/threonine kinase |
XP_057764680.1 |
Pfam | PF11883 |
DUF3403 | Family | 804 | 848 | 2.1e-16 | 60.5 | Domain of unknown function (DUF3403) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。