Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000952`

染色体: Chr05 坐标: 7684694-7690010 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000952`
名称	SmilChr05G000952
描述	protein TRANSPORT INHIBITOR RESPONSE 1-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	7684694 - 7690010 / `+`

ID 对照

NCBI Gene ID	`LOC130985666`
GeneID	`130985666`
locus_tag	`-`
NCBI Name	`LOC130985666`
原始查询	`SmilChr05G000952`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein TRANSPORT INHIBITOR RESPONSE 1-like
产物	protein TRANSPORT INHIBITOR RESPONSE 1-like
Arabidopsis	`AT3G62980` (TIR1) F-box/RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825473] identity=54.2; qcov=0.945; evalue=0; confidence=high
Rice	`Os04g0395600` (OsAFB2) - identity=52.1; qcov=0.953; evalue=0; confidence=high
GO	GO:0019005 (SCF ubiquitin ligase complex); GO:0031146 (SCF-dependent proteasomal ubiquitin-dependent protein catabolic process)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF18511 (F-box_5); PF18791 (Transp_inhibit)
InterPro	-
eggNOG	-
NR	GeneID:130985666

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057764724.1`
2	Nucleus	细胞核	0.80000	`XP_057764724.1`
3	Cytosol	细胞质基质	0.40000	`XP_057764724.1`
4	Chromosome	染色体	0.00000	`XP_057764724.1`
5	Centromere	着丝粒	0.00000	`XP_057764724.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:7686000`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A23,B103
`Chr5:7687976`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B134,B140,C19
`Chr5:7688117`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B140,C83
`Chr5:7688576`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C13,C70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764724.1

598 aa

299

598

F-box_5

Transp_inhibit

PF18511 F-box_5 35-73 aa PF18791 Transp_inhibit 94-139 aa

XP_057764725.1

598 aa

299

598

F-box_5

Transp_inhibit

PF18511 F-box_5 35-73 aa PF18791 Transp_inhibit 94-139 aa

XP_057764726.1

598 aa

299

598

F-box_5

Transp_inhibit

PF18511 F-box_5 35-73 aa PF18791 Transp_inhibit 94-139 aa

XP_057764727.1

598 aa

299

598

F-box_5

Transp_inhibit

PF18511 F-box_5 35-73 aa PF18791 Transp_inhibit 94-139 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764724.1`	Pfam	`PF18511`	F-box_5	Domain	35	73	7.5e-18	64.5	F-box
`XP_057764724.1`	Pfam	`PF18791`	Transp_inhibit	Repeat	94	139	6.9e-22	77.4	Transport inhibitor response 1 protein domain
`XP_057764725.1`	Pfam	`PF18511`	F-box_5	Domain	35	73	7.5e-18	64.5	F-box
`XP_057764725.1`	Pfam	`PF18791`	Transp_inhibit	Repeat	94	139	6.9e-22	77.4	Transport inhibitor response 1 protein domain
`XP_057764726.1`	Pfam	`PF18511`	F-box_5	Domain	35	73	7.5e-18	64.5	F-box
`XP_057764726.1`	Pfam	`PF18791`	Transp_inhibit	Repeat	94	139	6.9e-22	77.4	Transport inhibitor response 1 protein domain
`XP_057764727.1`	Pfam	`PF18511`	F-box_5	Domain	35	73	7.5e-18	64.5	F-box
`XP_057764727.1`	Pfam	`PF18791`	Transp_inhibit	Repeat	94	139	6.9e-22	77.4	Transport inhibitor response 1 protein domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057908743.1
CATTTTCTGTCGACTTCACCTAAGCCACCACCACTGCCTAATAATTTAAAGCTTTACGTACAAATATACATACATTATTGATTTATTGTTCGTATTTCTCATTGAATCTACGTACCTGGCTGGGTTCGCTTCGTTATAAATATGAAAAAAAATCATTTCTTTTTTAGGCTCCTTTTATGCAGCAGTAGCCAGTCGTAAGTAGTAACAGTAATTATTTGTTATTAATTATTAATTTTTTATATCTTTGGTGTAATAAAATA...

XM_057908741.1
ATAATTTAAAGCTTTACGTACAAATATACATACATTATTGATTTATTGTTCGTATTTCTCATTGAATCTACGTACCTGGCTGGGTTCGCTTCGTTATAAATATGAAAAAAAATCATTTCTTTTTTAGGCTCCTTTTATGCAGCAGTAGCCAGTCGTAAGTAGTAACAGTAATTATTTGTTATTAATTATTAATTTTTTATATCTTTGGTGTAATAAAATATGCAAGTGGGTTGTCTGAGCTTTTCTTTGGCTCTTGGGTT...

CDS

4 records

下载 CDS FASTA

LOC130985666
ATGAATCCATCCTCCGAAAGCGAAATGGATCCAGAGCCGAAGAAAGCTGAGGATTTGCCATCAAACTCTGAAAATTCCCATGGGCCAGTTCACCCTCAATCACCATTCCCAGATGAAGTGCTAGAGAAAGTCCTCTCATTCGTAGATTCACATAAAGACAGGAGCTCAATCTCCCTTGTGCGCAAAGATTGGTATAATGCTGAGAGATGGACAAGATCAAAGCTTTTTATTGGAAACTGCTATGCAGTGTCACCAGAAAT...

Protein

4 records

下载 Protein FASTA

XP_057764724.1
MNPSSESEMDPEPKKAEDLPSNSENSHGPVHPQSPFPDEVLEKVLSFVDSHKDRSSISLVRKDWYNAERWTRSKLFIGNCYAVSPEIVARRFRRIKSVTLKGKPRFSDFNMLPLDWGANVHSWLVMFAKVYPFLEELRLKRMTITDEGLELLAKSFPGFKALSLSSCDGFTENGLKAIASHCRHLTELNIQDSITEEVGGGWLSCFPENFASLEILNFSSLNGDVNFDDLERLVSRCKLLRVLKVNESITLDQLQRLLVH...

XP_057764725.1
MNPSSESEMDPEPKKAEDLPSNSENSHGPVHPQSPFPDEVLEKVLSFVDSHKDRSSISLVRKDWYNAERWTRSKLFIGNCYAVSPEIVARRFRRIKSVTLKGKPRFSDFNMLPLDWGANVHSWLVMFAKVYPFLEELRLKRMTITDEGLELLAKSFPGFKALSLSSCDGFTENGLKAIASHCRHLTELNIQDSITEEVGGGWLSCFPENFASLEILNFSSLNGDVNFDDLERLVSRCKLLRVLKVNESITLDQLQRLLVH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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