Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000967`

染色体: Chr05 坐标: 7809252-7812283 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000967`
名称	SmilChr05G000967
描述	uncharacterized SmilChr05G000967
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	7809252 - 7812283 / `-`

ID 对照

NCBI Gene ID	`LOC130985681`
GeneID	`130985681`
locus_tag	`-`
NCBI Name	`LOC130985681`
原始查询	`SmilChr05G000967`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os11g0640500; species=rice; confidence=medium
产物	hit=Os11g0640500; species=rice; confidence=medium
Arabidopsis	`AT5G45540` (AT5G45540) transmembrane protein, putative (DUF594) [Source:NCBI gene (formerly Entrezgene);Acc:834590] identity=45.2; qcov=0.54; evalue=6.28e-118; confidence=medium
Rice	`Os11g0640500` - identity=37; qcov=1.01; evalue=1.21e-147; confidence=medium
GO	-
KEGG	-
Pfam	PF04578 (DUF594); PF13968 (DUF4220)
InterPro	-
eggNOG	-
NR	GeneID:130985681

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057764747.1`
2	Nucleus	细胞核	0.00000	`XP_057764747.1`
3	Chromosome	染色体	0.00000	`XP_057764747.1`
4	Centromere	着丝粒	0.00000	`XP_057764747.1`
5	Chromatin	染色质	0.00000	`XP_057764747.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:7810345`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C34,C4,C5
`Chr5:7810392`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C25
`Chr5:7810632`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B36
`Chr5:7810632`	`GA`	`G`	1bp_deletion	CDS_variant	1	B36
`Chr5:7810635`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B27,C13
`Chr5:7810644`	`TA`	`T`	1bp_deletion	frameshift_variant	1	A18
`Chr5:7810644`	`TA`	`T`	1bp_deletion	CDS_variant	1	A18
`Chr5:7811160`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B102,B125,B77
`Chr5:7811197`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B27,C13
`Chr5:7811235`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B13,B40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764747.1

794 aa

397

794

DUF4220

DUF594

PF13968 DUF4220 52-423 aa PF04578 DUF594 724-775 aa

XP_057764748.1

794 aa

397

794

DUF4220

DUF594

PF13968 DUF4220 52-423 aa PF04578 DUF594 724-775 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764747.1`	Pfam	`PF13968`	DUF4220	Family	52	423	1e-101	341.7	Domain of unknown function (DUF4220)
`XP_057764747.1`	Pfam	`PF04578`	DUF594	Family	724	775	5.7e-25	87.4	Protein of unknown function, DUF594
`XP_057764748.1`	Pfam	`PF13968`	DUF4220	Family	52	423	1e-101	341.7	Domain of unknown function (DUF4220)
`XP_057764748.1`	Pfam	`PF04578`	DUF594	Family	724	775	5.7e-25	87.4	Protein of unknown function, DUF594

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908764.1
CAGATCTTTTCGTAAATGGCTTCAGATAAATGATCAATATCTGTGTGCAGGAATAATGGAATCTCGTGTTTCACGATGAGAACCCCAAAAAGCACACGCCCTATATAGCAAGCAGGACCATGCAGTTTTGTACTTGGCTTGCTCTGGAGGTGATTCTTTGATCTTTACAGGCAGTCGTGTTCCTTTCCTTTTTTCTTTTTTCTTTTTTCACTTGGATATATATGATTTTTTTATTCCAAGAGTGCATCGTACATTTTTCG...

XM_057908765.1
AGTTTTGTACTTGGCTTGCTCTGGAGGTGATTCTTTGATCTTTACAGGCAGTCGTGTTCCTTTCCTTTTTTCTTTTTTCTTTTTTCACTTGGATATATATGATTTTTTTATTCCAAGAGTGCATCGTACATTTTTCGTTGATGCATTAAATATCGCAAAGAGTTTCCTCATACCTCACTCGTGCTCGGTGCTCCTACTTAGCAACTAGTGGCGACACATTTGAATTTGTGGGAGGATGAAATTTACGGGTGTGGAGTACT...

CDS

2 records

下载 CDS FASTA

LOC130985681
ATGAAATTTACGGGTGTGGAGTACTTGAAGCATCTATGGGAGACCTGGGATCTGAGAGGGTTCGTGTTGCTGAGCTTGTGGCTGCAGTCATTTCTGATATTAGCAGCGCCTCTGAGAAAACGAACCCGGTCAAGCTGGGTGATCCTGCCTCTATGGTCGGCCTACCTGCTGGCGGATTGGGCAGCGAATTTCGCGGTGGGGCTGATCTCAAACAGCCAGAGCAGCAAGTGCAGCAGCACCAAAGGTGTGTACAACAATGC...

Protein

2 records

下载 Protein FASTA

XP_057764747.1
MKFTGVEYLKHLWETWDLRGFVLLSLWLQSFLILAAPLRKRTRSSWVILPLWSAYLLADWAANFAVGLISNSQSSKCSSTKGVYNNADLLAFWAPFLLVHLGGPDTITAFALEDNELWLRHLLALIFQACAAGYVLYQTLPHNPLLIPTICMLVSGLIKYSERTMSLYRASLNRFRDSMLKDPDPGPDYAKIMDEYRSMTEAKLPTRIVMIEEPPRGEQATTVVKTGPLQGNEAVLYAYLYFEIFKGLIVDLIFSSRDRN...

XP_057764748.1
MKFTGVEYLKHLWETWDLRGFVLLSLWLQSFLILAAPLRKRTRSSWVILPLWSAYLLADWAANFAVGLISNSQSSKCSSTKGVYNNADLLAFWAPFLLVHLGGPDTITAFALEDNELWLRHLLALIFQACAAGYVLYQTLPHNPLLIPTICMLVSGLIKYSERTMSLYRASLNRFRDSMLKDPDPGPDYAKIMDEYRSMTEAKLPTRIVMIEEPPRGEQATTVVKTGPLQGNEAVLYAYLYFEIFKGLIVDLIFSSRDRN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器