Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000980`

染色体: Chr05 坐标: 7918077-7921479 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000980`
名称	SmilChr05G000980
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	7918077 - 7921479 / `+`

ID 对照

NCBI Gene ID	`LOC130985690`
GeneID	`130985690`
locus_tag	`-`
NCBI Name	`LOC130985690`
原始查询	`SmilChr05G000980`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300
产物	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300
Arabidopsis	`AT1G11330` (AT1G11330) S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837675] identity=45.7; qcov=0.993; evalue=0; confidence=high
Rice	`Os04g0633200` - identity=40.6; qcov=1.02; evalue=0; confidence=medium
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen)
KEGG	-
Pfam	PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2)
InterPro	-
eggNOG	-
NR	GeneID:130985690

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057764760.1`
2	Nucleus	细胞核	0.00000	`XP_057764760.1`
3	Chromosome	染色体	0.00000	`XP_057764760.1`
4	Centromere	着丝粒	0.00000	`XP_057764760.1`
5	Chromatin	染色质	0.00000	`XP_057764760.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:7918316`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr5:7918430`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B122,B32,B62,C26
`Chr5:7918525`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B56,B96,C51
`Chr5:7918567`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C18
`Chr5:7918725`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C31
`Chr5:7918937`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B94
`Chr5:7918937`	`TG`	`T`	1bp_deletion	CDS_variant	1	B94
`Chr5:7919035`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D5
`Chr5:7919146`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A13
`Chr5:7919305`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A24,B137,B53,B66,C42
`Chr5:7919440`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr5:7919524`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B139

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764760.1

828 aa

414

828

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 79-181 aa PF00954 S_locus_glycop 213-321 aa PF08276 PAN_2 343-402 aa PF00069 Pkinase 510-780 aa PF07714 PK_Tyr_Ser-Thr 513-778 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764760.1`	Pfam	`PF01453`	B_lectin	Repeat	79	181	1.8e-32	112.7	D-mannose binding lectin
`XP_057764760.1`	Pfam	`PF00954`	S_locus_glycop	Domain	213	321	4.6e-29	101.9	S-locus glycoprotein domain
`XP_057764760.1`	Pfam	`PF08276`	PAN_2	Domain	343	402	7.8e-14	52.3	PAN-like domain
`XP_057764760.1`	Pfam	`PF00069`	Pkinase	Domain	510	780	1.7e-44	152.9	Protein kinase domain
`XP_057764760.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	513	778	1.6e-43	149.6	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057908777.1
TCCTCCAATCACTTTTCCAAGTCTCCCTCTTTGGACAATGGCCACTTTGAACGCATCATCATTGCTACCCATCACAAACTCGAAACTTCAATAATCTTTTATTTTCAAAACAATCAAAATGAGTTCTTATGCGTTATCGTATGTTTTACTATATATATAATGCATGGTAAGACGAGCCACCAAAATTATAAACCCATTGCTTCAATTCCCAATATTGTTGTACAATGAAACAGAGAGTCGCTCAAGTCTTTGTTCATAAA...

CDS

1 records

下载 CDS FASTA

LOC130985690
ATGAAACAGAGAGTCGCTCAAGTCTTTGTTCATAAATCAATACTTGTTCTTATAATCCTCGGAAGTGTTGTACGTTTGAGCTCGAGCATAGAAGAAGACACCATTTCAGGCGGTGTTGTCATCAAAGATCCAGAAACCATCGTATCCCAAAAGCAGATATACAAATTAGGATTCTTCACTCCTCCAAACACCACCAACCGCTACGTAGGTGTCTTCTTCGCCTTCTCAGTGGAAACCGTGATATGGGTCGCCAACAGAGA...

Protein

1 records

下载 Protein FASTA

XP_057764760.1
MKQRVAQVFVHKSILVLIILGSVVRLSSSIEEDTISGGVVIKDPETIVSQKQIYKLGFFTPPNTTNRYVGVFFAFSVETVIWVANREKPLKDASGAVTLSQDGNLVVIDGANQTLWSTNLTTSSVNSSVQILDTGNLVVRDAATGDTLWQSFSEPTNVVVPGMTLSQNVKTGKQVAVSAWKNASDPEIGSFSAGLDALSIPQLFAWNEGRPHWRSGPWNGLIFLGIKEMFYAYLDGFTQVKNDSAGNFFYTKPQENVYIT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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