当前解析结果
SmilChr05G000981| 统一新 Gene ID | SmilChr05G000981 |
|---|---|
| 名称 | SmilChr05G000981 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 7930433 - 7933770 / + |
| NCBI Gene ID | LOC130985691 |
|---|---|
| GeneID | 130985691 |
| locus_tag | - |
| NCBI Name | LOC130985691 |
| 原始查询 | SmilChr05G000981 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 |
| Arabidopsis | AT1G11330 (AT1G11330)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837675] identity=45.3; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0556600- identity=40.2; qcov=1.05; evalue=0; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985691 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057764761.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057764761.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057764761.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057764761.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057764761.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:7930647 |
T |
TG |
1bp_insertion | frameshift_variant | 1 | B20 |
Chr5:7930647 |
T |
TG |
1bp_insertion | CDS_variant | 1 | B20 |
Chr5:7930710 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C40,C80,C87 |
Chr5:7930858 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr5:7930893 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A22,B139,C79 |
Chr5:7930942 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C12,C84 |
Chr5:7930950 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,C12,C40,C84 |
Chr5:7931004 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B130,C57 |
Chr5:7931019 |
G |
A |
EMS_canonical_SNV | stop_gained | 29 | A22,A5,B108,B115,B117,B119,B120,B132,B27,B32,B41,B45,B48,B73,B76,B79,B8,B99,C15,C3,C38,C53,C55,C56,C6,C65,C81,C87,D3 |
Chr5:7931045 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | B68,B95 |
Chr5:7931045 |
TG |
T |
1bp_deletion | CDS_variant | 2 | B68,B95 |
Chr5:7931094 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B139,C44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764761.1PF01453
B_lectin 76-178 aa
PF00954
S_locus_glycop 211-319 aa
PF08276
PAN_2 341-401 aa
PF00069
Pkinase 507-776 aa
PF07714
PK_Tyr_Ser-Thr 510-775 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764761.1 |
Pfam | PF01453 |
B_lectin | Repeat | 76 | 178 | 7.8e-33 | 113.8 | D-mannose binding lectin |
XP_057764761.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 211 | 319 | 2.7e-27 | 96.2 | S-locus glycoprotein domain |
XP_057764761.1 |
Pfam | PF08276 |
PAN_2 | Domain | 341 | 401 | 2.9e-14 | 53.6 | PAN-like domain |
XP_057764761.1 |
Pfam | PF00069 |
Pkinase | Domain | 507 | 776 | 6.1e-44 | 151.1 | Protein kinase domain |
XP_057764761.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 510 | 775 | 1.6e-43 | 149.6 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。