当前解析结果
SmilChr05G000983| 统一新 Gene ID | SmilChr05G000983 |
|---|---|
| 名称 | SmilChr05G000983 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 7963068 - 7969549 / - |
| NCBI Gene ID | LOC131025474 |
|---|---|
| GeneID | 131025474 |
| locus_tag | - |
| NCBI Name | LOC131025474 |
| 原始查询 | SmilChr05G000983 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=29.7; qcov=0.739; evalue=2.53e-82; confidence=low |
| Rice | Os02g0202800 (OJ1135_F06.10-2)- identity=26.9; qcov=0.782; evalue=4.08e-66; confidence=low |
| GO | GO:0005524 (ATP binding); GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding); GO:0016887 (ATP hydrolysis activity) |
| KEGG | - |
| Pfam | PF00005 (ABC_tran); PF03101 (FAR1); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025474 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057811252.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057811252.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057811252.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057811252.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057811252.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:7963101 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | B118 |
Chr5:7963101 |
GT |
G |
1bp_deletion | CDS_variant | 1 | B118 |
Chr5:7963343 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr5:7963367 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B30,C25 |
Chr5:7963436 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,C48 |
Chr5:7963487 |
GCA |
G |
2bp_deletion | frameshift_variant | 1 | B78 |
Chr5:7963487 |
GCA |
G |
2bp_deletion | CDS_variant | 1 | B78 |
Chr5:7963491 |
A |
AAT |
2bp_insertion | frameshift_variant | 1 | B78 |
Chr5:7963491 |
A |
AAT |
2bp_insertion | CDS_variant | 1 | B78 |
Chr5:7963656 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A20,B20,B39,B55 |
Chr5:7963669 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B42 |
Chr5:7963746 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811252.1PF00005
ABC_tran 37-91 aa
PF03101
FAR1 150-244 aa
PF10551
MULE 366-450 aa
PF04434
SWIM 615-639 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811252.1 |
Pfam | PF00005 |
ABC_tran | Domain | 37 | 91 | 1.8e-07 | 32.6 | ABC transporter |
XP_057811252.1 |
Pfam | PF03101 |
FAR1 | Domain | 150 | 244 | 1.8e-18 | 67.7 | FAR1 DNA-binding domain |
XP_057811252.1 |
Pfam | PF10551 |
MULE | Domain | 366 | 450 | 1.2e-19 | 71.2 | MULE transposase domain |
XP_057811252.1 |
Pfam | PF04434 |
SWIM | Domain | 615 | 639 | 0.00025 | 21.2 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。