当前解析结果
SmilChr05G000986| 统一新 Gene ID | SmilChr05G000986 |
|---|---|
| 名称 | SmilChr05G000986 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase B120 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 7986239 - 7989958 / + |
| NCBI Gene ID | LOC130985697 |
|---|---|
| GeneID | 130985697 |
| locus_tag | - |
| NCBI Name | LOC130985697 |
| 原始查询 | SmilChr05G000986 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase B120 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase B120 |
| Arabidopsis | AT4G21390 (B120)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827891] identity=52.2; qcov=1.02; evalue=0; confidence=high |
| Rice | Os07g0551300 (OSJNBb0041B22.109)- identity=47.5; qcov=0.958; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2); PF11883 (DUF3403) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985697 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057764768.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057764768.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057764768.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057764768.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057764768.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:7986618 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A22,B19,C59,C76,C79 |
Chr5:7986660 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr5:7986955 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B119,B98,D8 |
Chr5:7987145 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr5:7987535 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr5:7987615 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:7987666 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A13,B27,C13 |
Chr5:7988319 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C4,D2 |
Chr5:7988530 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:7988941 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B27,C13,D10 |
Chr5:7988947 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B105 |
Chr5:7989777 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764768.1PF01453
B_lectin 78-181 aa
PF00954
S_locus_glycop 213-321 aa
PF08276
PAN_2 335-398 aa
PF00069
Pkinase 509-711 aa
PF07714
PK_Tyr_Ser-Thr 510-709 aa
PF11883
DUF3403 780-825 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764768.1 |
Pfam | PF01453 |
B_lectin | Repeat | 78 | 181 | 9.6e-36 | 123.1 | D-mannose binding lectin |
XP_057764768.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 213 | 321 | 7.9e-25 | 88.3 | S-locus glycoprotein domain |
XP_057764768.1 |
Pfam | PF08276 |
PAN_2 | Domain | 335 | 398 | 1.8e-18 | 67.1 | PAN-like domain |
XP_057764768.1 |
Pfam | PF00069 |
Pkinase | Domain | 509 | 711 | 8.4e-46 | 157.2 | Protein kinase domain |
XP_057764768.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 510 | 709 | 1.3e-48 | 166.3 | Protein tyrosine and serine/threonine kinase |
XP_057764768.1 |
Pfam | PF11883 |
DUF3403 | Family | 780 | 825 | 2.7e-07 | 31.3 | Domain of unknown function (DUF3403) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。