当前解析结果
SmilChr05G000998| 统一新 Gene ID | SmilChr05G000998 |
|---|---|
| 名称 | SmilChr05G000998 |
| 描述 | uncharacterized SmilChr05G000998 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 8100189 - 8101604 / + |
| NCBI Gene ID | LOC130985712 |
|---|---|
| GeneID | 130985712 |
| locus_tag | - |
| NCBI Name | LOC130985712 |
| 原始查询 | SmilChr05G000998 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine protease, putative (Protein of unknown function, DUF538) [Source:NCBI gene (formerly Entrezgene);Acc:835541]; symbol=AT5G54530; hit=AT5G54530; species=arabidopsis; confidence=high |
| 产物 | serine protease, putative (Protein of unknown function, DUF538) [Source:NCBI gene (formerly Entrezgene);Acc:835541]; symbol=AT5G54530; hit=AT5G54530; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G54530 (AT5G54530)serine protease, putative (Protein of unknown function, DUF538) [Source:NCBI gene (formerly Entrezgene);Acc:835541] identity=62.2; qcov=0.707; evalue=1.38e-53; confidence=high |
| Rice | Os01g0913100- identity=40.5; qcov=0.607; evalue=9.34e-25; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF04398 (DUF538) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985712 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057764781.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057764781.1 |
| 3 | Chloroplast stroma | 叶绿体基质 | 0.20000 | XP_057764781.1 |
| 4 | Chloroplast thylakoid | 类囊体 | 0.20000 | XP_057764781.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057764781.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:8101095 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr5:8101100 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr5:8101266 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr5:8101405 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B12 |
Chr5:8101405 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B12 |
Chr5:8101428 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057764781.1PF04398
DUF538 59-167 aa
XP_057764782.1PF04398
DUF538 61-169 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764781.1 |
Pfam | PF04398 |
DUF538 | Family | 59 | 167 | 4.8e-27 | 95.4 | Protein of unknown function, DUF538 |
XP_057764782.1 |
Pfam | PF04398 |
DUF538 | Family | 61 | 169 | 4.9e-27 | 95.3 | Protein of unknown function, DUF538 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。