Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G001002

染色体: Chr05 坐标: 8184810-8189177 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G001002
名称SmilChr05G001002
描述exo-alpha-bergamotene synthase-like
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向8184810 - 8189177 / +

ID 对照

NCBI Gene IDLOC130985714
GeneID130985714
locus_tag-
NCBI NameLOC130985714
原始查询SmilChr05G001002

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述exo-alpha-bergamotene synthase-like
产物exo-alpha-bergamotene synthase-like
ArabidopsisAT4G16740 (TPS03)
terpene synthase 03 [Source:NCBI gene (formerly Entrezgene);Acc:827377]
identity=45.9; qcov=0.941; evalue=9.51e-122; confidence=high
RiceOs03g0361600 (OsTPS12)
-
identity=35.5; qcov=0.855; evalue=1.41e-66; confidence=medium
GOGO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process)
KEGG-
PfamPF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2)
InterPro-
eggNOG-
NRGeneID:130985714

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 0.80000 XP_057764787.1
2 Chloroplast 叶绿体 0.80000 XP_057764788.1
3 Cytoplasm 细胞质 0.60000 XP_057764787.1
4 Nucleus 细胞核 0.00000 XP_057764785.1
5 Chromosome 染色体 0.00000 XP_057764785.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:8186127 C T EMS_canonical_SNV CDS_variant 3 B49,B99,C73
Chr5:8186203 G A EMS_canonical_SNV CDS_variant 1 B80
Chr5:8188645 G A EMS_canonical_SNV CDS_variant 1 B49
Chr5:8188827 C T EMS_canonical_SNV CDS_variant 2 B1,B2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764785.1
564 aa
N
1
282
564
Terpene_synth
Terpene_synth_C
Terpene_syn_C_2
Terpene_synth_C
C
PF01397 Terpene_synth 14-190 aa PF03936 Terpene_synth_C 247-445 aa PF19086 Terpene_syn_C_2 289-507 aa PF03936 Terpene_synth_C 467-506 aa
XP_057764786.1
564 aa
N
1
282
564
Terpene_synth
Terpene_synth_C
Terpene_syn_C_2
Terpene_synth_C
C
PF01397 Terpene_synth 14-190 aa PF03936 Terpene_synth_C 247-445 aa PF19086 Terpene_syn_C_2 289-507 aa PF03936 Terpene_synth_C 467-506 aa
XP_057764787.1
542 aa
N
1
271
542
Terpene_synth
Terpene_synth_C
Terpene_syn_C_2
C
PF01397 Terpene_synth 14-190 aa PF03936 Terpene_synth_C 247-484 aa PF19086 Terpene_syn_C_2 289-485 aa
XP_057764788.1
442 aa
N
1
221
442
Terpene_synth
Terpene_synth_C
Terpene_syn_C_2
C
PF01397 Terpene_synth 14-190 aa PF03936 Terpene_synth_C 247-425 aa PF19086 Terpene_syn_C_2 289-423 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057764785.1 Pfam PF01397 Terpene_synth Repeat 14 190 8.3e-51 173.1 Terpene synthase, N-terminal domain
XP_057764785.1 Pfam PF03936 Terpene_synth_C Domain 247 445 1.5e-81 273.9 Terpene synthase family, metal binding domain
XP_057764785.1 Pfam PF19086 Terpene_syn_C_2 Domain 289 507 7.4e-50 170.2 Terpene synthase family 2, C-terminal metal binding
XP_057764785.1 Pfam PF03936 Terpene_synth_C Domain 467 506 1.5e-81 273.9 Terpene synthase family, metal binding domain
XP_057764786.1 Pfam PF01397 Terpene_synth Repeat 14 190 8.3e-51 173.1 Terpene synthase, N-terminal domain
XP_057764786.1 Pfam PF03936 Terpene_synth_C Domain 247 445 1.5e-81 273.9 Terpene synthase family, metal binding domain
XP_057764786.1 Pfam PF19086 Terpene_syn_C_2 Domain 289 507 7.4e-50 170.2 Terpene synthase family 2, C-terminal metal binding
XP_057764786.1 Pfam PF03936 Terpene_synth_C Domain 467 506 1.5e-81 273.9 Terpene synthase family, metal binding domain
XP_057764787.1 Pfam PF01397 Terpene_synth Repeat 14 190 7.6e-51 173.2 Terpene synthase, N-terminal domain
XP_057764787.1 Pfam PF03936 Terpene_synth_C Domain 247 484 4.6e-87 292.0 Terpene synthase family, metal binding domain
XP_057764787.1 Pfam PF19086 Terpene_syn_C_2 Domain 289 485 9.8e-56 189.4 Terpene synthase family 2, C-terminal metal binding
XP_057764788.1 Pfam PF01397 Terpene_synth Repeat 14 190 1.1e-51 176.0 Terpene synthase, N-terminal domain
XP_057764788.1 Pfam PF03936 Terpene_synth_C Domain 247 425 4.6e-63 213.5 Terpene synthase family, metal binding domain
XP_057764788.1 Pfam PF19086 Terpene_syn_C_2 Domain 289 423 8.4e-33 114.5 Terpene synthase family 2, C-terminal metal binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057908802.1
ATCAGTCGTATATATATATTCAGGCGATTCTCATCTCTCATACTCACATTTCGAACAACTATATAGCAATCTTTCAGTATTTGTGAAATACTGATCTCCACATCTAATCACAGCACAGCTTGTTAAGATCGAAATTGATCATGGAGGAGGTGAGGAGGTCAGCAAACCTTGGGGCAAGTATCTGGGATGACGATCACATTCAGTCTCTCACAAGTTTATACACGGGGGAAAAGTACGTAGCTGAAGCTGAGAAACTGAAA...
XM_057908803.1
ATCAGTCGTATATATATATTCAGGCGATTCTCATCTCTCATACTCACATTTCGAACAACTATATAGCAATCTTTCAGTATTTGTGAAATACTGATCTCCACATCTAATCACAGCACAGATCGAAATTGATCATGGAGGAGGTGAGGAGGTCAGCAAACCTTGGGGCAAGTATCTGGGATGACGATCACATTCAGTCTCTCACAAGTTTATACACGGGGGAAAAGTACGTAGCTGAAGCTGAGAAACTGAAAAATCTGGTG...

CDS

4 records

下载 CDS FASTA
LOC130985714
ATGGAGGAGGTGAGGAGGTCAGCAAACCTTGGGGCAAGTATCTGGGATGACGATCACATTCAGTCTCTCACAAGTTTATACACGGGGGAAAAGTACGTAGCTGAAGCTGAGAAACTGAAAAATCTGGTGAAAATAATGATAGACGAAACCGAAGACGAGCTGGACCAACTTGAGCTTATCGACAGTCTGCAGAGGCTGGGTTTATGTAACCACTTCGAGGATCGAATAGCTAAGATGTTAGACAACATTTATGAGGCGGA...
LOC130985714
ATGGAGGAGGTGAGGAGGTCAGCAAACCTTGGGGCAAGTATCTGGGATGACGATCACATTCAGTCTCTCACAAGTTTATACACGGGGGAAAAGTACGTAGCTGAAGCTGAGAAACTGAAAAATCTGGTGAAAATAATGATAGACGAAACCGAAGACGAGCTGGACCAACTTGAGCTTATCGACAGTCTGCAGAGGCTGGGTTTATGTAACCACTTCGAGGATCGAATAGCTAAGATGTTAGACAACATTTATGAGGCGGA...

Protein

4 records

下载 Protein FASTA
XP_057764785.1
MEEVRRSANLGASIWDDDHIQSLTSLYTGEKYVAEAEKLKNLVKIMIDETEDELDQLELIDSLQRLGLCNHFEDRIAKMLDNIYEAEKCRDDENMEKNLHITALRFRLLRQHGYHVPQEIFCSFMDDVGNFKASVCEDVRGVVSLYEASYLSVEGESLLDLAKDFSLNNLTRRIDKITEPRLAEQVKHALEVPRHWRVQRLEAKWYIQAYESRSSANLILVELAKLDFNMVQATHQQELKRISRWYKETGLPEKLGFARH...
XP_057764786.1
MEEVRRSANLGASIWDDDHIQSLTSLYTGEKYVAEAEKLKNLVKIMIDETEDELDQLELIDSLQRLGLCNHFEDRIAKMLDNIYEAEKCRDDENMEKNLHITALRFRLLRQHGYHVPQEIFCSFMDDVGNFKASVCEDVRGVVSLYEASYLSVEGESLLDLAKDFSLNNLTRRIDKITEPRLAEQVKHALEVPRHWRVQRLEAKWYIQAYESRSSANLILVELAKLDFNMVQATHQQELKRISRWYKETGLPEKLGFARH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器