当前解析结果
SmilChr05G001004| 统一新 Gene ID | SmilChr05G001004 |
|---|---|
| 名称 | SmilChr05G001004 |
| 描述 | uncharacterized SmilChr05G001004 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 8209457 - 8215572 / - |
| NCBI Gene ID | LOC130985717 |
|---|---|
| GeneID | 130985717 |
| locus_tag | - |
| NCBI Name | LOC130985717 |
| 原始查询 | SmilChr05G001004 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | eukaryotic translation initiation factor-like protein [Source:NCBI gene (formerly Entrezgene);Acc:837691]; symbol=AT1G11480; hit=AT1G11480; species=arabidopsis; confidence=medium |
| 产物 | eukaryotic translation initiation factor-like protein [Source:NCBI gene (formerly Entrezgene);Acc:837691]; symbol=AT1G11480; hit=AT1G11480; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G11480 (AT1G11480)eukaryotic translation initiation factor-like protein [Source:NCBI gene (formerly Entrezgene);Acc:837691] identity=39.9; qcov=1.03; evalue=5.75e-107; confidence=medium |
| Rice | Os07g0546100 (OJ1612_A04.102)- identity=34.2; qcov=0.762; evalue=1.37e-44; confidence=low |
| GO | GO:0003729 (mRNA binding); GO:0003743 (translation initiation factor activity) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985717 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057764791.1 |
| 2 | Cytoplasmic granule | 细胞质颗粒 | 0.60000 | XP_057764791.1 |
| 3 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.60000 | XP_057764791.1 |
| 4 | P-body | P-body | 0.40000 | XP_057764791.1 |
| 5 | Cytosol | 细胞质基质 | 0.40000 | XP_057764791.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:8210135 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B113,B60,C16 |
Chr5:8213270 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
Chr5:8213306 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B103 |
Chr5:8213306 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B103 |
Chr5:8214303 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。