Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001012`

染色体: Chr05 坐标: 8302989-8304353 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001012`
名称	SmilChr05G001012
描述	oxygen-evolving enhancer protein 3, chloroplastic-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	8302989 - 8304353 / `-`

ID 对照

NCBI Gene ID	`LOC130985726`
GeneID	`130985726`
locus_tag	`-`
NCBI Name	`LOC130985726`
原始查询	`SmilChr05G001012`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	oxygen-evolving enhancer protein 3, chloroplastic-like
产物	oxygen-evolving enhancer protein 3%2C chloroplastic-like
Arabidopsis	`AT4G05180` (PSBQ-2) photosystem II subunit Q-2 [Source:NCBI gene (formerly Entrezgene);Acc:825866] identity=71.4; qcov=1.02; evalue=1.76e-112; confidence=high
Rice	`Os07g0544800` - identity=61.7; qcov=1; evalue=1.39e-68; confidence=high
GO	GO:0005509 (calcium ion binding); GO:0009507 (chloroplast); GO:0009523 (photosystem II); GO:0009654 (photosystem II oxygen evolving complex); GO:0009767 (photosynthetic electron transport chain); GO:0015979 (photosynthesis); GO:0019898 (extrinsic component of membrane); GO:0045156 (GO:0045156)
KEGG	smil00195 (Photosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF05757 (PsbQ)
InterPro	-
eggNOG	-
NR	GeneID:130985726

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057764804.1`
2	Chloroplast thylakoid	类囊体	1.00000	`XP_057764804.1`
3	Chloroplast thylakoid membrane	类囊体膜	1.00000	`XP_057764805.1`
4	Nucleus	细胞核	0.00000	`XP_057764804.1`
5	Chromosome	染色体	0.00000	`XP_057764804.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:8303122`	`TGG`	`T`	2bp_deletion	frameshift_variant	1	A9
`Chr5:8303122`	`TGG`	`T`	2bp_deletion	CDS_variant	1	A9
`Chr5:8303138`	`G`	`A`	EMS_canonical_SNV	stop_gained	212	A1,A10,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A3,A4,A5,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B117,B118,B119,B120,B121,B122,B124,B125,B126,B127,B128,B129,B130,B131,B132,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B27,B28,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B56,B57,B58,B59,B6,B60,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B72,B73,B74,B75,B76,B77,B78,B79,B80,B81,B82,B83,B85,B87,B89,B9,B91,B92,B93,B95,B96,B97,B98,B99,C11,C12,C13,C15,C16,C17,C18,C19,C2,C20,C21,C22,C25,C29,C3,C30,C32,C34,C35,C36,C37,C38,C39,C4,C40,C42,C43,C44,C47,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C65,C66,C67,C68,C69,C7,C70,C71,C72,C74,C75,C76,C78,C79,C80,C81,C82,C83,C84,C85,C9,D1,D2,D3,D5,D6,D7,D8,D9
`Chr5:8303204`	`T`	`TA`	1bp_insertion	frameshift_variant	41	A22,A5,A7,B108,B109,B115,B117,B119,B120,B131,B132,B14,B27,B32,B37,B45,B48,B58,B67,B73,B76,B79,B8,B80,B85,B91,C14,C15,C3,C35,C37,C38,C53,C55,C56,C6,C65,C81,D1,D3,D7
`Chr5:8303216`	`TAA`	`T`	2bp_deletion	frameshift_variant	196	A1,A10,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A7,A8,A9,B1,B100,B101,B102,B103,B104,B106,B107,B11,B110,B111,B112,B117,B118,B119,B12,B120,B121,B122,B124,B125,B126,B127,B130,B131,B132,B134,B135,B136,B138,B139,B14,B15,B16,B18,B2,B20,B21,B22,B23,B24,B27,B28,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B44,B45,B46,B47,B48,B49,B50,B51,B52,B53,B54,B56,B57,B58,B59,B60,B61,B62,B64,B65,B66,B68,B69,B7,B70,B73,B74,B75,B77,B78,B79,B80,B81,B82,B83,B85,B86,B87,B88,B9,B90,B91,B92,B94,B95,B96,B97,B98,B99,C11,C13,C14,C15,C16,C17,C18,C19,C20,C21,C22,C24,C25,C29,C3,C30,C32,C33,C34,C35,C37,C38,C39,C4,C40,C41,C43,C44,C45,C47,C49,C5,C50,C51,C53,C55,C56,C57,C59,C6,C60,C61,C62,C63,C67,C69,C7,C71,C72,C74,C75,C76,C77,C78,C79,C80,C81,C83,C84,C85,C9,D1,D2,D3,D5,D7,D8,D9
`Chr5:8303219`	`TTA`	`T`	2bp_deletion	frameshift_variant	197	A1,A10,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A7,A8,A9,B1,B100,B101,B102,B103,B104,B106,B107,B11,B110,B111,B112,B117,B118,B119,B12,B120,B121,B122,B124,B125,B126,B127,B130,B131,B132,B134,B135,B136,B138,B139,B14,B15,B16,B18,B2,B20,B21,B22,B23,B24,B27,B28,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B44,B45,B46,B47,B48,B49,B50,B51,B52,B53,B54,B56,B57,B58,B59,B60,B61,B62,B64,B65,B66,B68,B69,B7,B70,B73,B74,B75,B77,B78,B79,B80,B81,B82,B83,B85,B86,B87,B88,B9,B90,B91,B92,B94,B95,B96,B97,B98,B99,C11,C13,C14,C15,C16,C17,C18,C19,C20,C21,C22,C24,C25,C29,C3,C30,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C43,C44,C45,C47,C49,C5,C50,C51,C53,C55,C56,C57,C59,C6,C60,C61,C62,C63,C67,C69,C7,C71,C72,C74,C75,C76,C77,C78,C79,C80,C81,C83,C84,C85,C9,D1,D2,D3,D5,D7,D8,D9
`Chr5:8303223`	`TAG`	`T`	2bp_deletion	frameshift_variant	2	B4,B49
`Chr5:8303223`	`TAG`	`T`	2bp_deletion	CDS_variant	2	B4,B49
`Chr5:8303225`	`GA`	`G`	1bp_deletion	frameshift_variant	193	A1,A10,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A7,A8,A9,B1,B100,B101,B102,B103,B104,B106,B107,B11,B110,B111,B112,B117,B118,B119,B12,B120,B121,B122,B124,B125,B126,B127,B130,B131,B132,B134,B135,B136,B138,B139,B14,B15,B16,B18,B2,B20,B21,B22,B23,B24,B27,B28,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B40,B41,B42,B44,B45,B46,B47,B48,B50,B51,B52,B53,B54,B56,B57,B58,B59,B60,B61,B62,B64,B65,B66,B68,B69,B7,B70,B71,B73,B74,B75,B77,B78,B79,B80,B81,B82,B83,B85,B86,B87,B88,B9,B90,B91,B94,B95,B96,B97,B98,B99,C11,C13,C14,C15,C16,C17,C18,C19,C20,C21,C22,C24,C25,C29,C3,C30,C32,C33,C34,C35,C37,C38,C39,C4,C40,C41,C43,C44,C45,C47,C49,C5,C50,C51,C53,C55,C56,C57,C59,C6,C60,C61,C62,C63,C67,C69,C7,C71,C72,C74,C75,C76,C78,C79,C80,C81,C83,C84,C85,C9,D1,D2,D3,D5,D7,D8,D9
`Chr5:8303236`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr5:8303243`	`A`	`AAT`	2bp_insertion	frameshift_variant	192	A1,A10,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A7,A8,A9,B1,B100,B101,B102,B103,B104,B106,B107,B11,B110,B111,B112,B117,B118,B119,B12,B120,B121,B122,B124,B125,B126,B127,B130,B131,B132,B134,B135,B136,B138,B139,B14,B15,B16,B18,B2,B20,B21,B22,B23,B24,B27,B28,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B40,B41,B42,B44,B45,B46,B47,B48,B50,B51,B52,B53,B54,B56,B57,B58,B59,B60,B61,B62,B64,B65,B66,B68,B69,B7,B70,B71,B73,B74,B75,B77,B78,B79,B80,B81,B82,B83,B85,B86,B87,B88,B9,B90,B91,B94,B95,B96,B97,B98,B99,C11,C13,C14,C15,C16,C17,C18,C19,C20,C21,C22,C24,C25,C29,C3,C30,C32,C33,C34,C35,C37,C38,C39,C4,C40,C41,C43,C44,C45,C47,C49,C5,C50,C53,C55,C56,C57,C59,C6,C60,C61,C62,C63,C67,C69,C7,C71,C72,C74,C75,C76,C78,C79,C80,C81,C83,C84,C85,C9,D1,D2,D3,D5,D7,D8,D9
`Chr5:8303245`	`G`	`GA`	1bp_insertion	frameshift_variant	192	A1,A10,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A7,A8,A9,B1,B100,B101,B102,B103,B104,B106,B107,B11,B110,B111,B112,B117,B118,B119,B12,B120,B121,B122,B124,B125,B126,B127,B130,B131,B132,B134,B135,B136,B138,B139,B14,B15,B16,B18,B2,B20,B21,B22,B23,B24,B27,B28,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B40,B41,B42,B44,B45,B46,B47,B48,B50,B51,B52,B53,B54,B56,B57,B58,B59,B60,B61,B62,B64,B65,B66,B68,B69,B7,B70,B71,B73,B74,B75,B77,B78,B79,B80,B81,B82,B83,B85,B86,B87,B88,B9,B90,B91,B94,B95,B96,B98,B99,C11,C13,C14,C15,C16,C17,C18,C19,C20,C21,C22,C24,C25,C29,C3,C30,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C43,C44,C45,C47,C49,C5,C50,C53,C55,C56,C57,C59,C6,C60,C61,C62,C63,C67,C69,C7,C71,C72,C74,C75,C76,C78,C79,C80,C81,C83,C84,C85,C9,D1,D2,D3,D5,D7,D8,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764804.1

247 aa

124

247

PsbQ

PF05757 PsbQ 1-198 aa

XP_057764805.1

229 aa

114

229

PsbQ

PF05757 PsbQ 1-229 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764804.1`	Pfam	`PF05757`	PsbQ	Family	1	198	1.6e-62	212.0	Oxygen evolving enhancer protein 3
`XP_057764805.1`	Pfam	`PF05757`	PsbQ	Family	1	229	2.5e-78	263.5	Oxygen evolving enhancer protein 3

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908822.1
ACTGTAATATACTGTAAACTTGGGGGTCCTTAAGCAAAAGTATAGACATAATCCTACATGGGATTTTGGATTTGAAGAAATGACAAAGGAATTTGTAGACAAAAAATCATTGAGGTGTACGTGTCACAAGTGTAGTGGCTAGAATAGAACGCGATCATACATGTCAAGATATGGCACATTGATTGGCTGATAGCATATCCAGAGTGAGATAAGGCGCTTCCTACATCACATGCTCACTCACTCAAAAACTTATACTCTGA...

XM_057908821.1
TACATGTCAAGATATGGCACATTGATTGGCTGATAGCATATCCAGAGTGAGATAAGGCGCTTCCTACATCACATGCTCACTCACTCAAAAACTTATACTCTGATCCTACTTTTCCTTACTTTCGCCTGAGGATTTCGATTTCAACACACTAGAAAAACAGTTTTGAGGAATGGCTCAAGCGATGGCTTCAATGGCTGGCTTACGCGGCTCTTCCCAGGCGGTCCTCGAAGGCAGCCTTCAATCCAACCGCTTGATCAGTG...

CDS

2 records

下载 CDS FASTA

LOC130985726
ATGGCTCAAGCGATGGCTTCAATGGCTGGCTTACGCGGCTCTTCCCAGGCGGTCCTCGAAGGCAGCCTTCAATCCAACCGCTTGATCAGTGGCAACACCAGCAGGACCCCCGCGGCGAGAATCGGATTCAACATCCGCGCGCATCAACAGAGCTCAGCCGAGACCGAGACTAGCCGCCGAGCCATGTTGGGGCTTGTTGCCGCTGGGATTGTCTCCGGCTCCTTCGTCCAAGCCGTGCTCGCCGAAGCCAAGCCCATCAA...

Protein

2 records

下载 Protein FASTA

XP_057764804.1
MAQAMASMAGLRGSSQAVLEGSLQSNRLISGNTSRTPAARIGFNIRAHQQSSAETETSRRAMLGLVAAGIVSGSFVQAVLAEAKPIKVGPPPPPSGGLPGTLNSDQARDFDLPLKNRFYIQPLAPAEAAVRAKESAKEIVGVKSFIDKKAWPYVQNDLRSKAEYLRYDLNTIISSKPKEEKKSLKELTGKLFQDISNVSSFLPFTPLLIKLKLILCVLFCLPAGPCCKDQEHPRSREVLCHSCIYTQ

XP_057764805.1
MAQAMASMAGLRGSSQAVLEGSLQSNRLISGNTSRTPAARIGFNIRAHQQSSAETETSRRAMLGLVAAGIVSGSFVQAVLAEAKPIKVGPPPPPSGGLPGTLNSDQARDFDLPLKNRFYIQPLAPAEAAVRAKESAKEIVGVKSFIDKKAWPYVQNDLRSKAEYLRYDLNTIISSKPKEEKKSLKELTGKLFQDISNLDHAAKIKSTPEAEKYYAIAVSTLNDVLAKLG

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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