当前解析结果
SmilChr05G001057| 统一新 Gene ID | SmilChr05G001057 |
|---|---|
| 名称 | SmilChr05G001057 |
| 描述 | pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 8749200 - 8750527 / - |
| NCBI Gene ID | LOC130985755 |
|---|---|
| GeneID | 130985755 |
| locus_tag | - |
| NCBI Name | LOC130985755 |
| 原始查询 | SmilChr05G001057 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like |
| 产物 | pentatricopeptide repeat-containing protein At1g61870%2C mitochondrial-like |
| Arabidopsis | AT1G61870 (PPR336)pentatricopeptide repeat 336 [Source:NCBI gene (formerly Entrezgene);Acc:842484] identity=44.3; qcov=1.03; evalue=4.92e-125; confidence=medium |
| Rice | Os01g0793200- identity=40.7; qcov=0.92; evalue=2.18e-100; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985755 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057764854.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057764854.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057764854.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057764854.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057764854.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:8749490 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A16,B111,C19,C70 |
Chr5:8749500 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
Chr5:8749662 |
CAG |
C |
2bp_deletion | frameshift_variant | 11 | A22,B117,B32,B45,B48,B8,C15,C55,C56,C65,C81 |
Chr5:8749673 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C67,D7 |
Chr5:8749805 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A4,C20,C5,D4 |
Chr5:8749856 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr5:8749859 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr5:8749903 |
G |
A |
EMS_canonical_SNV | stop_gained | 8 | B18,B30,B65,B78,B94,C31,C8,D7 |
Chr5:8749925 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr5:8749967 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B23,C5,D10,D11,D4 |
Chr5:8750248 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C61 |
Chr5:8750248 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C61 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764854.1PF01535
PPR 109-133 aa
PF13812
PPR_3 124-183 aa
PF13041
PPR_2 171-218 aa
PF01535
PPR 175-204 aa
PF13812
PPR_3 194-250 aa
PF13041
PPR_2 241-290 aa
PF01535
PPR 245-273 aa
PF12854
PPR_1 272-305 aa
PF01535
PPR 280-308 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764854.1 |
Pfam | PF01535 |
PPR | Repeat | 109 | 133 | 4.8e-25 | 86.7 | PPR repeat |
XP_057764854.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 124 | 183 | 6.2e-19 | 68.6 | Pentatricopeptide repeat domain |
XP_057764854.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 171 | 218 | 1.4e-35 | 121.8 | PPR repeat family |
XP_057764854.1 |
Pfam | PF01535 |
PPR | Repeat | 175 | 204 | 4.8e-25 | 86.7 | PPR repeat |
XP_057764854.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 194 | 250 | 6.2e-19 | 68.6 | Pentatricopeptide repeat domain |
XP_057764854.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 241 | 290 | 1.4e-35 | 121.8 | PPR repeat family |
XP_057764854.1 |
Pfam | PF01535 |
PPR | Repeat | 245 | 273 | 4.8e-25 | 86.7 | PPR repeat |
XP_057764854.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 272 | 305 | 1.4e-29 | 102.2 | PPR repeat |
XP_057764854.1 |
Pfam | PF01535 |
PPR | Repeat | 280 | 308 | 4.8e-25 | 86.7 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。