Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001062`

染色体: Chr05 坐标: 8783026-8794472 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001062`
名称	SmilChr05G001062
描述	uncharacterized SmilChr05G001062
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	8783026 - 8794472 / `+`

ID 对照

NCBI Gene ID	`LOC131025484`
GeneID	`131025484`
locus_tag	`-`
NCBI Name	`LOC131025484`
原始查询	`SmilChr05G001062`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	binding / calmodulin binding protein [Source:NCBI gene (formerly Entrezgene);Acc:828270]; symbol=AT4G21820; hit=AT4G21820; species=arabidopsis; confidence=high
产物	binding / calmodulin binding protein [Source:NCBI gene (formerly Entrezgene);Acc:828270]; symbol=AT4G21820; hit=AT4G21820; species=arabidopsis; confidence=high
Arabidopsis	`AT4G21820` (AT4G21820) binding / calmodulin binding protein [Source:NCBI gene (formerly Entrezgene);Acc:828270] identity=46; qcov=0.74; evalue=0; confidence=high
Rice	`Os07g0517400` - identity=33.3; qcov=0.118; evalue=5.42e-18; confidence=weak
GO	GO:0000278 (mitotic cell cycle); GO:0000922 (spindle pole); GO:0005515 (protein binding); GO:0007051 (spindle organization); GO:0051295 (establishment of meiotic spindle localization)
KEGG	-
Pfam	PF00307 (CH); PF00612 (IQ)
InterPro	-
eggNOG	-
NR	GeneID:131025484

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	0.60000	`XP_057811262.1`
2	Nucleus	细胞核	0.20000	`XP_057811262.1`
3	Nucleus membrane	核膜	0.20000	`XP_057811262.1`
4	Cytosol	细胞质基质	0.20000	`XP_057811262.1`
5	Peroxisome	过氧化物酶体	0.20000	`XP_057811262.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:8783259`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr5:8783348`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C48,C57
`Chr5:8783352`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C3,C8
`Chr5:8783463`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B105
`Chr5:8783668`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C3,C8
`Chr5:8783790`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B71,D10
`Chr5:8784602`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr5:8784780`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B105
`Chr5:8785515`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B54,B93,C26
`Chr5:8785669`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr5:8786057`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B97,C14,C6
`Chr5:8786685`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B21

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811262.1

1500 aa

750

1500

PF00307 CH 427-515 aa PF00612 IQ 833-853 aa PF00612 IQ 934-951 aa PF00612 IQ 980-997 aa PF00612 IQ 1026-1043 aa PF00612 IQ 1071-1089 aa PF00612 IQ 1121-1138 aa PF00612 IQ 1145-1161 aa PF00612 IQ 1250-1267 aa PF00612 IQ 1275-1293 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811262.1`	Pfam	`PF00307`	CH	Domain	427	515	6.8e-09	36.6	Calponin homology (CH) domain
`XP_057811262.1`	Pfam	`PF00612`	IQ	Motif	833	853	2.5e-54	176.7	IQ calmodulin-binding motif
`XP_057811262.1`	Pfam	`PF00612`	IQ	Motif	934	951	2.5e-54	176.7	IQ calmodulin-binding motif
`XP_057811262.1`	Pfam	`PF00612`	IQ	Motif	980	997	2.5e-54	176.7	IQ calmodulin-binding motif
`XP_057811262.1`	Pfam	`PF00612`	IQ	Motif	1026	1043	2.5e-54	176.7	IQ calmodulin-binding motif
`XP_057811262.1`	Pfam	`PF00612`	IQ	Motif	1071	1089	2.5e-54	176.7	IQ calmodulin-binding motif
`XP_057811262.1`	Pfam	`PF00612`	IQ	Motif	1121	1138	2.5e-54	176.7	IQ calmodulin-binding motif
`XP_057811262.1`	Pfam	`PF00612`	IQ	Motif	1145	1161	2.5e-54	176.7	IQ calmodulin-binding motif
`XP_057811262.1`	Pfam	`PF00612`	IQ	Motif	1250	1267	2.5e-54	176.7	IQ calmodulin-binding motif
`XP_057811262.1`	Pfam	`PF00612`	IQ	Motif	1275	1293	2.5e-54	176.7	IQ calmodulin-binding motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955279.1
AAGGCGATAAGAGTATGCACCGAGGGCAATTCCGACATATAACCGCCAACGGTATCAACATTTAAATTCAAATCACAATCGGTAAAAGAGCAATTCAAAGTTCGAAAACATTTACCCCCTTCCTCTCAGACACTCCCCAGAAAAACAAAAATCAAGAAACCAACAATGGATTCTAAAAAACGGAAACCCAACCTAAATCATTCTTCGCCATCATCTTCTTCAATTTTCAGAGACATTTCGAATCTCAAAACCCCTCAACA...

CDS

1 records

下载 CDS FASTA

LOC131025484
ATGGATTCTAAAAAACGGAAACCCAACCTAAATCATTCTTCGCCATCATCTTCTTCAATTTTCAGAGACATTTCGAATCTCAAAACCCCTCAACATCCATCGAGAAACCCGAGTTTCCCGGCTTCCCCGCAGTTCTTCACTGCTCTGAAAAATACCCCCTCGTCCTCTTTCCGCCGCGGCCCCAAAACATCGGCTTTGAAATCGAAGGCGGCCCGTAGATTGAAGGCATTTGAATTAGAGCAATCCAAGTCTGCACGGAA...

Protein

1 records

下载 Protein FASTA

XP_057811262.1
MDSKKRKPNLNHSSPSSSSIFRDISNLKTPQHPSRNPSFPASPQFFTALKNTPSSSFRRGPKTSALKSKAARRLKAFELEQSKSARNAQTEKEKSLRSLARSLTVWLNFLFENPSSCGCDPALFTGELNGSDSSVGGEKKEAIVNNGKRENWPSRKVGVDGPWRGPKRQRDLLWRGEGNDMLAKDGFPNSMFSGLRVSLQEICSFDDLKERMRMYLSLGSCKDIFEAMTQVTKNIDEGRLKMRASCPVMSDVGMKEKAMK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器