Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001068`

染色体: Chr05 坐标: 8820187-8822661 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001068`
名称	SmilChr05G001068
描述	uncharacterized SmilChr05G001068
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	8820187 - 8822661 / `-`

ID 对照

NCBI Gene ID	`LOC130985751`
GeneID	`130985751`
locus_tag	`-`
NCBI Name	`LOC130985751`
原始查询	`SmilChr05G001068`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	AT hook motif-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835366]; symbol=AT5G52890; hit=AT5G52890; species=arabidopsis; confidence=low
产物	AT hook motif-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835366]; symbol=AT5G52890; hit=AT5G52890; species=arabidopsis; confidence=low
Arabidopsis	`AT5G52890` (AT5G52890) AT hook motif-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835366] identity=36.6; qcov=0.309; evalue=1.64e-18; confidence=low
Rice	`-` -
GO	-
KEGG	-
Pfam	PF27637 (MNM1_beta)
InterPro	-
eggNOG	-
NR	GeneID:130985751

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057764842.1`
2	Chromosome	染色体	0.00000	`XP_057764842.1`
3	Centromere	着丝粒	0.00000	`XP_057764842.1`
4	Chromatin	染色质	0.00000	`XP_057764842.1`
5	Telomere	端粒	0.00000	`XP_057764842.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:8820557`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B140,C32,C68
`Chr5:8820593`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A2,A24,C18,D3
`Chr5:8820688`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C75
`Chr5:8820869`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A10,B134,B44,C74,D7
`Chr5:8820914`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr5:8820998`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:8821067`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A2,C18,D3
`Chr5:8821229`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B124,C17,C38
`Chr5:8821370`	`C`	`CG`	1bp_insertion	frameshift_variant	1	B112
`Chr5:8821370`	`C`	`CG`	1bp_insertion	CDS_variant	1	B112
`Chr5:8821380`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B112
`Chr5:8821380`	`AC`	`A`	1bp_deletion	CDS_variant	1	B112

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764842.1

424 aa

212

424

MNM1_beta

PF27637 MNM1_beta 76-112 aa

XP_057764843.1

424 aa

212

424

MNM1_beta

PF27637 MNM1_beta 76-112 aa

XP_057764844.1

424 aa

212

424

MNM1_beta

PF27637 MNM1_beta 76-112 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764842.1`	Pfam	`PF27637`	MNM1_beta	Domain	76	112	5.1e-17	61.9	Metabolic network modulator 1 small beta sheet domain
`XP_057764843.1`	Pfam	`PF27637`	MNM1_beta	Domain	76	112	5.1e-17	61.9	Metabolic network modulator 1 small beta sheet domain
`XP_057764844.1`	Pfam	`PF27637`	MNM1_beta	Domain	76	112	5.1e-17	61.9	Metabolic network modulator 1 small beta sheet domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057908860.1
GAAATCTGCGCTGCGGCTGCGGCCAATATTTGATTCGTCTCCTTCCCTTCTTTTTTTTGCTTTTCCTTTATTCTTTAATGGCGTAGATTCATTCACAGATTCGTATAACAGAAACACACTCTCTTAGCACAACTGATTCTTTTTTATTTTTTCCTATTTTCTTTATTAATTATTACTACTTTCCTTCTTCAATATCGTCGTTGTAAACACAAAGTGATACGCAGAACAGAATTTCAGGCTACGTTCATCATTTTCATCCC...

XM_057908861.1
TGCGGCCAATATTTGATTCGTCTCCTTCCCTTCTTTTTTTTGCTTTTCCTTTATTCTTTAATGGCGTAGATTCATTCACAGATTCGTATAACAGAAACACACTCTCTTAGCACAACTGATTCTTTTTTATTTTTTCCTATTTTCTTTATTAATTATTACTACTTTCCTTCTTCAATATCGTCGTTGTAAACACAAAGTGATACGCAGAACAGAATTTCAGGCTACGTTCATCATTTTCATCCCTTATCTCGAAGCCTTAA...

CDS

3 records

下载 CDS FASTA

LOC130985751
ATGATGGCGGACGTTTCAGTGGCGGTGAGGGCGAAGCGCAAGCGCGGCCGTCCCCGCAAGGACAGCAACCTCTGCAGCGCAGGCACCTTACAGTCACCGGAAAATTCAAGTTTGATGAGAAATCAAGGCGCCGATCAGTTGTTATATCCGACTCCGGCAGCAGCAGCAGACGCCACCAAGAAATGTCAAGATTCGGAGAAGAACGATGAGGGCATGGTGGGGAGCATGGTTTACGGCGTGGTGGAGGGGTCGTTCGACGC...

Protein

3 records

下载 Protein FASTA

XP_057764842.1
MMADVSVAVRAKRKRGRPRKDSNLCSAGTLQSPENSSLMRNQGADQLLYPTPAAAADATKKCQDSEKNDEGMVGSMVYGVVEGSFDAGYLISVRIGNNLAPFRGVVFQPRKVVAVTAANDVAPQAKMYQRREIPVPVYEGQRATLQPPKQAVVRPPYADGKMVSKQFPYVHPTGNLRMVEEDEVMQAFEVSTSSGGSKSNLPNNGDATTNNQEPPSNLQNAAMAPQPSSALDEMMCRETMDQLQEMGQKRTSPPAMKVRQ...

XP_057764843.1
MMADVSVAVRAKRKRGRPRKDSNLCSAGTLQSPENSSLMRNQGADQLLYPTPAAAADATKKCQDSEKNDEGMVGSMVYGVVEGSFDAGYLISVRIGNNLAPFRGVVFQPRKVVAVTAANDVAPQAKMYQRREIPVPVYEGQRATLQPPKQAVVRPPYADGKMVSKQFPYVHPTGNLRMVEEDEVMQAFEVSTSSGGSKSNLPNNGDATTNNQEPPSNLQNAAMAPQPSSALDEMMCRETMDQLQEMGQKRTSPPAMKVRQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器