Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G001071

染色体: Chr05 坐标: 8856000-8864137 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G001071
名称SmilChr05G001071
描述heat shock 70 kDa protein 16
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向8856000 - 8864137 / +

ID 对照

NCBI Gene IDLOC130985742
GeneID130985742
locus_tag-
NCBI NameLOC130985742
原始查询SmilChr05G001071

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述heat shock 70 kDa protein 16
产物heat shock 70 kDa protein 16
ArabidopsisAT1G11660 (AT1G11660)
heat shock protein 70 (Hsp 70) family protein [Source:NCBI gene (formerly Entrezgene);Acc:837710]
identity=60.4; qcov=1.01; evalue=0; confidence=high
RiceOs01g0180800
-
identity=49.2; qcov=1.02; evalue=0; confidence=high
GOGO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0006457 (protein folding); GO:0140662 (ATP-dependent protein folding chaperone)
KEGG-
PfamPF00012 (HSP70); PF06723 (MreB_Mbl)
InterPro-
eggNOG-
NRGeneID:130985742

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057764831.1
2 Cytoplasm 细胞质 1.00000 XP_057764831.1
3 Cytosol 细胞质基质 1.00000 XP_057764831.1
4 Nucleoplasm 核质 0.40000 XP_057764831.1
5 Chromosome 染色体 0.00000 XP_057764831.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:8856905 G A EMS_canonical_SNV CDS_variant 4 A18,A4,C20,D4
Chr5:8857133 G A EMS_canonical_SNV CDS_variant 4 A2,A24,C18,D3
Chr5:8857199 G A EMS_canonical_SNV CDS_variant 5 B19,B42,B43,B62,B72
Chr5:8857419 C T EMS_canonical_SNV CDS_variant 3 A4,C20,D4
Chr5:8857557 G A EMS_canonical_SNV CDS_variant 1 B104
Chr5:8857592 G A EMS_canonical_SNV CDS_variant 3 B108,B76,C53
Chr5:8857641 C T EMS_canonical_SNV CDS_variant 2 C73,D6
Chr5:8857764 G A EMS_canonical_SNV CDS_variant 1 D7
Chr5:8859124 G A EMS_canonical_SNV CDS_variant 4 A18,A4,C20,D4
Chr5:8860934 C T EMS_canonical_SNV CDS_variant 2 B125,B77
Chr5:8861652 G A EMS_canonical_SNV CDS_variant 1 C39
Chr5:8861813 G A EMS_canonical_SNV CDS_variant 4 C60,C73,D11,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057764831.1
759 aa
N
1
380
759
HSP70
MreB_Mbl
C
PF00012 HSP70 5-655 aa PF06723 MreB_Mbl 121-377 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057764831.1 Pfam PF00012 HSP70 Family 5 655 2.6e-143 479.1 Hsp70 protein
XP_057764831.1 Pfam PF06723 MreB_Mbl Family 121 377 1.2e-11 44.7 MreB/Mbl protein

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA
XR_009089073.1
TATGCGATTAAAGTTCGATTTTTCAGCATTGTCTGCCAACTATCCAGAATATAGTTTTTGACATCAAAGGTGAAACATTAAATCAGAAGAAAATAAAAATAAAAAAATTCTCGTGTTGATGTTACGCAGAATCGGTACAAGGTATATAAGGAAAGTATCTTCGAAATATTCTTCGCCCTTGATTTGCAAGAAATTCATTTCTGAATTTGCAAGAAATTAAGGGCATTTCTGCAGTCATCCGTCTTCTTATCTCCTTCAGA...
XR_009089072.1
TGCGATTAAAGTTCGATTTTTCAGCATTGTCTGCCAACTATCCAGAATATAGTTTTTGACATCAAAGGTGAAACATTAAATCAGAAGAAAATAAAAATAAAAAAATTCTCGTGTTGATGTTACGCAGAATCGGTACAAGGTATATAAGGAAAGTATCTTCGAAATATTCTTCGCCCTTGATTTGCAAGAAATTCATTTCTGAATTTGCAAGAAATTAAGGGCATTTCTGCAGTCATCCGTCTTCTTATCTCCTTCAGAGT...

CDS

1 records

下载 CDS FASTA
LOC130985742
ATGGAGATGAGTGTAGTGGGGTTTGACATCGGAAATGAGAATCTGGTTATAGCAGTAGCTAAGCAACGAGGAATTGATGTCTTATTGAATGATGAGTCAAAACGAGAAAACCCGGCAGTGGTTTCGTTTGGGGAAAAGCAGAGGTTTCTGGGTTCTGCTGGGGCTGCATCTGCAACTATGCATCCCAAGTCGACTGTATCTCAGGTCAAGAGGTTAATTGGTCGGAATTTTAGTGAACCTTCTGTGCAGGATGACCTAAG...

Protein

1 records

下载 Protein FASTA
XP_057764831.1
MEMSVVGFDIGNENLVIAVAKQRGIDVLLNDESKRENPAVVSFGEKQRFLGSAGAASATMHPKSTVSQVKRLIGRNFSEPSVQDDLRLLPFETSEGPDGGILIHLQYLNERHTFTPVQILAMLFAHLKQIAEKNLEMQISNCVIGVPCYFTALQRRAYLHAAEIAGLSPVRLMHDCTAVGLGYGIYKSEFPNGGPANVVFVDVGHSDTQVSVVSFEPGHMKVLSHAFDSNLGGRDFDEVLVKHFAALFREQYNIDVYSST...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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