Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G001074

染色体: Chr05 坐标: 8910495-8915819 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G001074
名称SmilChr05G001074
描述uncharacterized GPI-anchored protein At1g61900
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向8910495 - 8915819 / -

ID 对照

NCBI Gene IDLOC130985757
GeneID130985757
locus_tag-
NCBI NameLOC130985757
原始查询SmilChr05G001074

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:842486]; symbol=AT1G61900; hit=AT1G61900; species=arabidopsis; confidence=high
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:842486]; symbol=AT1G61900; hit=AT1G61900; species=arabidopsis; confidence=high
ArabidopsisAT1G61900 (AT1G61900)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:842486]
identity=60.5; qcov=0.913; evalue=1.27e-144; confidence=high
RiceOs07g0102300 (SRL1)
-
identity=55.2; qcov=0.918; evalue=8.13e-129; confidence=high
GOGO:0005886 (plasma membrane)
KEGG-
PfamPF19160 (SPARK); PF26584 (At1g61900)
InterPro-
eggNOG-
NRGeneID:130985757

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057764856.1
2 Vacuole 液泡 0.20000 XP_057764856.1
3 Cell wall 细胞壁 0.20000 XP_057764858.1
4 Nucleus 细胞核 0.00000 XP_057764856.1
5 Chromosome 染色体 0.00000 XP_057764856.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:8912006 G A EMS_canonical_SNV CDS_variant 2 B54,C26
Chr5:8912183 G A EMS_canonical_SNV CDS_variant 2 B140,B93

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057764856.1
366 aa
N
1
183
366
SPARK
At1g61900
C
PF19160 SPARK 81-229 aa PF26584 At1g61900 283-356 aa
XP_057764857.1
366 aa
N
1
183
366
SPARK
At1g61900
C
PF19160 SPARK 81-229 aa PF26584 At1g61900 283-356 aa
XP_057764858.1
355 aa
N
1
178
355
SPARK
At1g61900
C
PF19160 SPARK 70-218 aa PF26584 At1g61900 272-345 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057764856.1 Pfam PF19160 SPARK Domain 81 229 2.3e-24 87.3 SPARK
XP_057764856.1 Pfam PF26584 At1g61900 Domain 283 356 1.4e-34 118.7 At1g61900-like domain
XP_057764857.1 Pfam PF19160 SPARK Domain 81 229 2.3e-24 87.3 SPARK
XP_057764857.1 Pfam PF26584 At1g61900 Domain 283 356 1.4e-34 118.7 At1g61900-like domain
XP_057764858.1 Pfam PF19160 SPARK Domain 70 218 2e-24 87.5 SPARK
XP_057764858.1 Pfam PF26584 At1g61900 Domain 272 345 1.4e-34 118.8 At1g61900-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057908874.1
AAGTCATAAAAGAAGCGAGAGATACGGTTGTCACGTGCCGCGCATGTGATCCATCAAAGCGTGCAAATTAAGAGAGAGAGGGGCAGCTCCATGGGACTTTAATGCATCATGCTCTCACCCCCTTTGGGTGGTTGTAGCTGCACAGCATATGCTGTATATGTAATTACCGGAGTTTTTCCTCGCCAAGGAAATCACGCTTATTTTCAACTACTATGTCTATTTGCTTCGCTTGTGGGGCCTCACCCTCTTCACAATTTATG...
XM_057908873.1
AAGTCATAAAAGAAGCGAGAGATACGGTTGTCACGTGCCGCGCATGTGATCCATCAAAGCGTGCAAATTAAGAGAGAGAGGGGCAGCTCCATGGGACTTTAATGCATCATGCTCTCACCCCCTTTGGGTGGTTGTAGCTGCACAGCATATGCTGTATATGTAATTACCGGAGTTTTTCCTCGCCAAGGAAATCACGCTTATTTTCAACTACTATGTCTATTTGCTTCGCTTGTGGGGCCTCACCCTCTTCACAATTTATG...

CDS

3 records

下载 CDS FASTA
LOC130985757
ATGTGGGGACCGCCGCTTCGAAGTTTGCACATTTGTGCTTCAATTCTGCTTCTGCCTCTTCTGTGTATATGTGAATCATCTGGCAACTTTTTGGATTATTCCAAAAGTTCTGCTCTGCAAGAAAGAAGGGCAGATTTACTTTTACCTGAAACTTCCCCAACTTCTGCTCCTCAGCCATTTCTTCCTCTTCTGGCTCCATCTCCATTAACACCATTCACAAATAGCACAATCCCAAAATTATCTGGATTTTGTGTGCTGAA...
LOC130985757
ATGTGGGGACCGCCGCTTCGAAGTTTGCACATTTGTGCTTCAATTCTGCTTCTGCCTCTTCTGTGTATATGTGAATCATCTGGCAACTTTTTGGATTATTCCAAAAGTTCTGCTCTGCAAGAAAGAAGGGCAGATTTACTTTTACCTGAAACTTCCCCAACTTCTGCTCCTCAGCCATTTCTTCCTCTTCTGGCTCCATCTCCATTAACACCATTCACAAATAGCACAATCCCAAAATTATCTGGATTTTGTGTGCTGAA...

Protein

3 records

下载 Protein FASTA
XP_057764856.1
MWGPPLRSLHICASILLLPLLCICESSGNFLDYSKSSALQERRADLLLPETSPTSAPQPFLPLLAPSPLTPFTNSTIPKLSGFCVLNFTALSNMMMVTSTDCMAAFAPVLANVVCCPQVEATLVILIGQSSKYTNTLALNGTLAAHCLSDFQQILVGQGANDSLSKICSIHSSNLTGGSCPVSDVSEFESTVETSNLLAACGKIDSVNECCEQVCQNAILDAARKLAQKAYSLLSLDGSHVLSDHTTRINDCKSIVLRWL...
XP_057764857.1
MWGPPLRSLHICASILLLPLLCICESSGNFLDYSKSSALQERRADLLLPETSPTSAPQPFLPLLAPSPLTPFTNSTIPKLSGFCVLNFTALSNMMMVTSTDCMAAFAPVLANVVCCPQVEATLVILIGQSSKYTNTLALNGTLAAHCLSDFQQILVGQGANDSLSKICSIHSSNLTGGSCPVSDVSEFESTVETSNLLAACGKIDSVNECCEQVCQNAILDAARKLAQKAYSLLSLDGSHVLSDHTTRINDCKSIVLRWL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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