当前解析结果
SmilChr05G001077| 统一新 Gene ID | SmilChr05G001077 |
|---|---|
| 名称 | SmilChr05G001077 |
| 描述 | uncharacterized SmilChr05G001077 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 8956587 - 8958982 / - |
| NCBI Gene ID | LOC130985784 |
|---|---|
| GeneID | 130985784 |
| locus_tag | - |
| NCBI Name | LOC130985784 |
| 原始查询 | SmilChr05G001077 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | actin cytoskeleton-regulatory complex pan-like protein [Source:NCBI gene (formerly Entrezgene);Acc:821579]; symbol=AT3G20350; hit=AT3G20350; species=arabidopsis; confidence=low |
| 产物 | actin cytoskeleton-regulatory complex pan-like protein [Source:NCBI gene (formerly Entrezgene);Acc:821579]; symbol=AT3G20350; hit=AT3G20350; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G20350 (AT3G20350)actin cytoskeleton-regulatory complex pan-like protein [Source:NCBI gene (formerly Entrezgene);Acc:821579] identity=33.9; qcov=0.668; evalue=3.56e-37; confidence=low |
| Rice | Os04g0625000- identity=34.2; qcov=0.53; evalue=1.26e-27; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985784 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057764884.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057764884.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057764884.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057764884.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057764884.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:8957157 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B19,B42,B43,B62,B72 |
Chr5:8957337 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B10,B108,B113,B9,C43 |
Chr5:8957488 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr5:8957566 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C3,C38 |
Chr5:8957574 |
TA |
T |
1bp_deletion | frameshift_variant | 180 | A1,A10,A11,A14,A16,A2,A20,A22,A24,A25,A3,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B106,B107,B108,B110,B111,B112,B113,B114,B115,B117,B118,B119,B120,B121,B122,B123,B124,B126,B127,B129,B13,B130,B131,B133,B134,B135,B136,B138,B139,B140,B15,B17,B18,B19,B2,B20,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B33,B34,B35,B37,B38,B4,B40,B41,B42,B44,B47,B49,B5,B50,B52,B54,B55,B57,B58,B59,B6,B63,B64,B65,B67,B68,B73,B74,B78,B79,B80,B81,B82,B83,B84,B85,B86,B87,B88,B9,B91,B95,B97,B98,B99,C1,C10,C11,C13,C15,C17,C18,C19,C23,C25,C26,C27,C28,C3,C30,C31,C33,C35,C36,C37,C38,C39,C4,C41,C42,C43,C44,C47,C48,C5,C51,C52,C53,C54,C56,C57,C58,C59,C6,C61,C63,C64,C66,C67,C68,C69,C70,C71,C72,C74,C75,C76,C77,C78,C80,C82,C83,C84,C85,C86,C87,C9,D11,D3,D5,D7,D9 |
Chr5:8957582 |
CAT |
C |
2bp_deletion | frameshift_variant | 196 | A1,A10,A11,A14,A16,A18,A2,A20,A22,A24,A25,A3,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B106,B107,B108,B110,B111,B112,B113,B114,B115,B117,B118,B119,B120,B121,B122,B123,B124,B126,B127,B129,B13,B130,B131,B132,B133,B134,B135,B136,B138,B139,B140,B15,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B31,B32,B33,B34,B35,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B47,B49,B5,B50,B52,B54,B55,B56,B57,B58,B59,B6,B62,B63,B64,B65,B67,B68,B70,B73,B74,B78,B79,B80,B81,B82,B83,B84,B85,B86,B87,B88,B9,B91,B95,B96,B97,B98,B99,C1,C10,C11,C13,C15,C17,C18,C19,C23,C25,C26,C27,C28,C3,C30,C31,C33,C35,C36,C37,C38,C39,C4,C41,C42,C43,C44,C47,C48,C5,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C61,C63,C64,C65,C66,C67,C68,C69,C70,C71,C72,C73,C74,C75,C76,C77,C78,C8,C80,C82,C83,C84,C85,C86,C87,C9,D1,D11,D3,D5,D7,D9 |
Chr5:8957696 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B38 |
Chr5:8957772 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr5:8957807 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | C20 |
Chr5:8957807 |
CT |
C |
1bp_deletion | CDS_variant | 1 | C20 |
Chr5:8957829 |
GTA |
G |
2bp_deletion | frameshift_variant | 1 | C20 |
Chr5:8957829 |
GTA |
G |
2bp_deletion | CDS_variant | 1 | C20 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。