当前解析结果
SmilChr05G001081| 统一新 Gene ID | SmilChr05G001081 |
|---|---|
| 名称 | SmilChr05G001081 |
| 描述 | tRNA wybutosine-synthesizing protein 2/3/4 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 8988963 - 8995107 / - |
| NCBI Gene ID | LOC130985787 |
|---|---|
| GeneID | 130985787 |
| locus_tag | - |
| NCBI Name | LOC130985787 |
| 原始查询 | SmilChr05G001081 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | tRNA wybutosine-synthesizing protein 2/3/4 |
| 产物 | tRNA wybutosine-synthesizing protein 2/3/4 |
| Arabidopsis | AT4G04670 (AT4G04670)Met-10+ like family protein / kelch repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:825800] identity=54.9; qcov=1.01; evalue=0; confidence=high |
| Rice | Os01g0300900- identity=31.4; qcov=0.229; evalue=5.56e-25; confidence=weak |
| GO | GO:0005515 (protein binding); GO:0005737 (cytoplasm); GO:0008175 (tRNA methyltransferase activity); GO:0030488 (tRNA methylation) |
| KEGG | - |
| Pfam | PF01344 (Kelch_1); PF02475 (TRM5-TYW2_MTfase); PF02676 (TYW3); PF07646 (Kelch_2); PF13418 (Beta-prop_TYW4); PF24681 (Kelch_KLHDC2_KLHL20_DRC7); PF24981 (Beta-prop_ATRN-LZTR1); PF25133 (TYW2_N_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985787 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057764887.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057764887.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057764887.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057764887.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057764887.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:8990890 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B19,B43,B62 |
Chr5:8991354 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A11,B68,C48 |
Chr5:8992115 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B55,C20 |
Chr5:8992340 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr5:8992449 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B110,B134,C75 |
Chr5:8993005 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr5:8993008 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:8993148 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr5:8994344 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C32,C45,C47,C68 |
Chr5:8994399 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B137,B66 |
Chr5:8994689 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
Chr5:8994846 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764887.1PF02676
TYW3 5-205 aa
PF13418
Beta-prop_TYW4 339-570 aa
PF01344
Kelch_1 341-382 aa
PF24681
Kelch_KLHDC2_KLHL20_DRC7 344-559 aa
PF07646
Kelch_2 392-433 aa
PF01344
Kelch_1 392-435 aa
PF24981
Beta-prop_ATRN-LZTR1 405-484 aa
PF07646
Kelch_2 442-486 aa
PF25133
TYW2_N_2 771-846 aa
PF02475
TRM5-TYW2_MTfase 850-1009 aa
XP_057764888.1PF02676
TYW3 5-205 aa
PF24681
Kelch_KLHDC2_KLHL20_DRC7 288-446 aa
PF13418
Beta-prop_TYW4 337-568 aa
PF01344
Kelch_1 339-380 aa
PF24681
Kelch_KLHDC2_KLHL20_DRC7 342-557 aa
PF07646
Kelch_2 390-431 aa
PF01344
Kelch_1 390-433 aa
PF24981
Beta-prop_ATRN-LZTR1 403-482 aa
PF07646
Kelch_2 440-484 aa
PF25133
TYW2_N_2 769-844 aa
PF02475
TRM5-TYW2_MTfase 848-1007 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764887.1 |
Pfam | PF02676 |
TYW3 | Family | 5 | 205 | 7.2e-64 | 215.7 | Methyltransferase TYW3 |
XP_057764887.1 |
Pfam | PF13418 |
Beta-prop_TYW4 | Repeat | 339 | 570 | 1.5e-28 | 101.1 | tRNA wybutosine-synthesizing protein 4, beta-propeller |
XP_057764887.1 |
Pfam | PF01344 |
Kelch_1 | Repeat | 341 | 382 | 4.7e-30 | 103.5 | Kelch motif |
XP_057764887.1 |
Pfam | PF24681 |
Kelch_KLHDC2_KLHL20_DRC7 | Repeat | 344 | 559 | 1.7e-62 | 211.3 | KLHDC2/KLHL20/DRC7 Kelch-repeats domain |
XP_057764887.1 |
Pfam | PF07646 |
Kelch_2 | Repeat | 392 | 433 | 3e-25 | 87.6 | Kelch motif |
XP_057764887.1 |
Pfam | PF01344 |
Kelch_1 | Repeat | 392 | 435 | 4.7e-30 | 103.5 | Kelch motif |
XP_057764887.1 |
Pfam | PF24981 |
Beta-prop_ATRN-LZTR1 | Repeat | 405 | 484 | 2.4e-51 | 175.4 | Attractin/LZTR1 beta-propeller |
XP_057764887.1 |
Pfam | PF07646 |
Kelch_2 | Repeat | 442 | 486 | 3e-25 | 87.6 | Kelch motif |
XP_057764887.1 |
Pfam | PF25133 |
TYW2_N_2 | Domain | 771 | 846 | 5.1e-14 | 52.8 | TYW2 N-terminal domain |
XP_057764887.1 |
Pfam | PF02475 |
TRM5-TYW2_MTfase | Domain | 850 | 1009 | 2.9e-33 | 115.9 | TRM5/TYW2 methyltransferase domain |
XP_057764888.1 |
Pfam | PF02676 |
TYW3 | Family | 5 | 205 | 7.2e-64 | 215.7 | Methyltransferase TYW3 |
XP_057764888.1 |
Pfam | PF24681 |
Kelch_KLHDC2_KLHL20_DRC7 | Repeat | 288 | 446 | 3.3e-90 | 301.9 | KLHDC2/KLHL20/DRC7 Kelch-repeats domain |
XP_057764888.1 |
Pfam | PF13418 |
Beta-prop_TYW4 | Repeat | 337 | 568 | 2.8e-28 | 100.2 | tRNA wybutosine-synthesizing protein 4, beta-propeller |
XP_057764888.1 |
Pfam | PF01344 |
Kelch_1 | Repeat | 339 | 380 | 4.6e-30 | 103.5 | Kelch motif |
XP_057764888.1 |
Pfam | PF24681 |
Kelch_KLHDC2_KLHL20_DRC7 | Repeat | 342 | 557 | 3.3e-90 | 301.9 | KLHDC2/KLHL20/DRC7 Kelch-repeats domain |
XP_057764888.1 |
Pfam | PF07646 |
Kelch_2 | Repeat | 390 | 431 | 2.9e-25 | 87.6 | Kelch motif |
XP_057764888.1 |
Pfam | PF01344 |
Kelch_1 | Repeat | 390 | 433 | 4.6e-30 | 103.5 | Kelch motif |
XP_057764888.1 |
Pfam | PF24981 |
Beta-prop_ATRN-LZTR1 | Repeat | 403 | 482 | 3e-52 | 178.4 | Attractin/LZTR1 beta-propeller |
XP_057764888.1 |
Pfam | PF07646 |
Kelch_2 | Repeat | 440 | 484 | 2.9e-25 | 87.6 | Kelch motif |
XP_057764888.1 |
Pfam | PF25133 |
TYW2_N_2 | Domain | 769 | 844 | 5.1e-14 | 52.9 | TYW2 N-terminal domain |
XP_057764888.1 |
Pfam | PF02475 |
TRM5-TYW2_MTfase | Domain | 848 | 1007 | 2.9e-33 | 115.9 | TRM5/TYW2 methyltransferase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。