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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G001082

染色体: Chr05 坐标: 8995190-8998111 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G001082
名称SmilChr05G001082
描述pentatricopeptide repeat-containing protein At1g11710, mitochondrial
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向8995190 - 8998111 / +

ID 对照

NCBI Gene IDLOC130985788
GeneID130985788
locus_tag-
NCBI NameLOC130985788
原始查询SmilChr05G001082

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g11710, mitochondrial
产物pentatricopeptide repeat-containing protein At1g11710%2C mitochondrial
ArabidopsisAT1G11710 (AT1G11710)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837715]
identity=45.6; qcov=1; evalue=0; confidence=high
RiceOs06g0152500
-
identity=28.3; qcov=0.772; evalue=1.12e-66; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130985788

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057764889.1
2 Chloroplast 叶绿体 0.20000 XP_057764889.1
3 Nucleus 细胞核 0.00000 XP_057764889.1
4 Chromosome 染色体 0.00000 XP_057764889.1
5 Centromere 着丝粒 0.00000 XP_057764889.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:8995842 G GT 1bp_insertion stop_gained,frameshift_variant 2 B54,C26
Chr5:8995842 G GT 1bp_insertion CDS_variant 2 B54,C26
Chr5:8995895 AT A 1bp_deletion frameshift_variant 1 C30
Chr5:8995895 AT A 1bp_deletion CDS_variant 1 C30
Chr5:8996027 G A EMS_canonical_SNV CDS_variant 1 B104
Chr5:8996043 C T EMS_canonical_SNV CDS_variant 1 C45
Chr5:8996044 C T EMS_canonical_SNV CDS_variant 2 C3,C38
Chr5:8996086 G A EMS_canonical_SNV CDS_variant 1 B13
Chr5:8996105 C T EMS_canonical_SNV CDS_variant 4 A20,B125,B128,B77
Chr5:8996137 C T EMS_canonical_SNV CDS_variant 3 B121,B38,B39
Chr5:8996275 G A EMS_canonical_SNV CDS_variant 1 D10
Chr5:8996675 CA C 1bp_deletion frameshift_variant 1 C6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764889.1
650 aa
N
1
325
650
PPR_3
PPR_2
PPR
PPR_long
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_1
PPR
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
C
PF13812 PPR_3 210-257 aa PF13041 PPR_2 213-261 aa PF01535 PPR 216-245 aa PF17177 PPR_long 225-349 aa PF12854 PPR_1 244-276 aa PF01535 PPR 252-277 aa PF13812 PPR_3 278-330 aa PF12854 PPR_1 284-313 aa PF13041 PPR_2 286-332 aa PF01535 PPR 288-318 aa PF12854 PPR_1 317-349 aa PF01535 PPR 324-352 aa PF13041 PPR_2 355-404 aa PF12854 PPR_1 388-414 aa PF01535 PPR 393-414 aa PF13041 PPR_2 426-474 aa PF01535 PPR 429-457 aa PF13812 PPR_3 452-506 aa PF12854 PPR_1 456-488 aa PF01535 PPR 464-490 aa PF01535 PPR 497-526 aa PF23276 TPR_24 501-572 aa PF13812 PPR_3 517-575 aa PF12854 PPR_1 529-557 aa PF13041 PPR_2 529-577 aa PF01535 PPR 531-561 aa PF13041 PPR_2 564-610 aa PF01535 PPR 566-596 aa
XP_057764890.1
650 aa
N
1
325
650
PPR_3
PPR_2
PPR
PPR_long
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_1
PPR
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
C
PF13812 PPR_3 210-257 aa PF13041 PPR_2 213-261 aa PF01535 PPR 216-245 aa PF17177 PPR_long 225-349 aa PF12854 PPR_1 244-276 aa PF01535 PPR 252-277 aa PF13812 PPR_3 278-330 aa PF12854 PPR_1 284-313 aa PF13041 PPR_2 286-332 aa PF01535 PPR 288-318 aa PF12854 PPR_1 317-349 aa PF01535 PPR 324-352 aa PF13041 PPR_2 355-404 aa PF12854 PPR_1 388-414 aa PF01535 PPR 393-414 aa PF13041 PPR_2 426-474 aa PF01535 PPR 429-457 aa PF13812 PPR_3 452-506 aa PF12854 PPR_1 456-488 aa PF01535 PPR 464-490 aa PF01535 PPR 497-526 aa PF23276 TPR_24 501-572 aa PF13812 PPR_3 517-575 aa PF12854 PPR_1 529-557 aa PF13041 PPR_2 529-577 aa PF01535 PPR 531-561 aa PF13041 PPR_2 564-610 aa PF01535 PPR 566-596 aa
XP_057764891.1
650 aa
N
1
325
650
PPR_3
PPR_2
PPR
PPR_long
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_1
PPR
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
C
PF13812 PPR_3 210-257 aa PF13041 PPR_2 213-261 aa PF01535 PPR 216-245 aa PF17177 PPR_long 225-349 aa PF12854 PPR_1 244-276 aa PF01535 PPR 252-277 aa PF13812 PPR_3 278-330 aa PF12854 PPR_1 284-313 aa PF13041 PPR_2 286-332 aa PF01535 PPR 288-318 aa PF12854 PPR_1 317-349 aa PF01535 PPR 324-352 aa PF13041 PPR_2 355-404 aa PF12854 PPR_1 388-414 aa PF01535 PPR 393-414 aa PF13041 PPR_2 426-474 aa PF01535 PPR 429-457 aa PF13812 PPR_3 452-506 aa PF12854 PPR_1 456-488 aa PF01535 PPR 464-490 aa PF01535 PPR 497-526 aa PF23276 TPR_24 501-572 aa PF13812 PPR_3 517-575 aa PF12854 PPR_1 529-557 aa PF13041 PPR_2 529-577 aa PF01535 PPR 531-561 aa PF13041 PPR_2 564-610 aa PF01535 PPR 566-596 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057764889.1 Pfam PF13812 PPR_3 Repeat 210 257 6.6e-41 138.9 Pentatricopeptide repeat domain
XP_057764889.1 Pfam PF13041 PPR_2 Repeat 213 261 2.7e-94 309.8 PPR repeat family
XP_057764889.1 Pfam PF01535 PPR Repeat 216 245 4.5e-72 234.1 PPR repeat
XP_057764889.1 Pfam PF17177 PPR_long Repeat 225 349 4.7e-30 105.3 Pentacotripeptide-repeat region of PRORP
XP_057764889.1 Pfam PF12854 PPR_1 Repeat 244 276 4.4e-83 273.4 PPR repeat
XP_057764889.1 Pfam PF01535 PPR Repeat 252 277 4.5e-72 234.1 PPR repeat
XP_057764889.1 Pfam PF13812 PPR_3 Repeat 278 330 6.6e-41 138.9 Pentatricopeptide repeat domain
XP_057764889.1 Pfam PF12854 PPR_1 Repeat 284 313 4.4e-83 273.4 PPR repeat
XP_057764889.1 Pfam PF13041 PPR_2 Repeat 286 332 2.7e-94 309.8 PPR repeat family
XP_057764889.1 Pfam PF01535 PPR Repeat 288 318 4.5e-72 234.1 PPR repeat
XP_057764889.1 Pfam PF12854 PPR_1 Repeat 317 349 4.4e-83 273.4 PPR repeat
XP_057764889.1 Pfam PF01535 PPR Repeat 324 352 4.5e-72 234.1 PPR repeat
XP_057764889.1 Pfam PF13041 PPR_2 Repeat 355 404 2.7e-94 309.8 PPR repeat family
XP_057764889.1 Pfam PF12854 PPR_1 Repeat 388 414 4.4e-83 273.4 PPR repeat
XP_057764889.1 Pfam PF01535 PPR Repeat 393 414 4.5e-72 234.1 PPR repeat
XP_057764889.1 Pfam PF13041 PPR_2 Repeat 426 474 2.7e-94 309.8 PPR repeat family
XP_057764889.1 Pfam PF01535 PPR Repeat 429 457 4.5e-72 234.1 PPR repeat
XP_057764889.1 Pfam PF13812 PPR_3 Repeat 452 506 6.6e-41 138.9 Pentatricopeptide repeat domain
XP_057764889.1 Pfam PF12854 PPR_1 Repeat 456 488 4.4e-83 273.4 PPR repeat
XP_057764889.1 Pfam PF01535 PPR Repeat 464 490 4.5e-72 234.1 PPR repeat
XP_057764889.1 Pfam PF01535 PPR Repeat 497 526 4.5e-72 234.1 PPR repeat
XP_057764889.1 Pfam PF23276 TPR_24 Repeat 501 572 5.5e-27 95.0 Pentatricopeptide repeat-containing protein
XP_057764889.1 Pfam PF13812 PPR_3 Repeat 517 575 6.6e-41 138.9 Pentatricopeptide repeat domain
XP_057764889.1 Pfam PF12854 PPR_1 Repeat 529 557 4.4e-83 273.4 PPR repeat
XP_057764889.1 Pfam PF13041 PPR_2 Repeat 529 577 2.7e-94 309.8 PPR repeat family
XP_057764889.1 Pfam PF01535 PPR Repeat 531 561 4.5e-72 234.1 PPR repeat
XP_057764889.1 Pfam PF13041 PPR_2 Repeat 564 610 2.7e-94 309.8 PPR repeat family
XP_057764889.1 Pfam PF01535 PPR Repeat 566 596 4.5e-72 234.1 PPR repeat
XP_057764890.1 Pfam PF13812 PPR_3 Repeat 210 257 6.6e-41 138.9 Pentatricopeptide repeat domain
XP_057764890.1 Pfam PF13041 PPR_2 Repeat 213 261 2.7e-94 309.8 PPR repeat family
XP_057764890.1 Pfam PF01535 PPR Repeat 216 245 4.5e-72 234.1 PPR repeat
XP_057764890.1 Pfam PF17177 PPR_long Repeat 225 349 4.7e-30 105.3 Pentacotripeptide-repeat region of PRORP
XP_057764890.1 Pfam PF12854 PPR_1 Repeat 244 276 4.4e-83 273.4 PPR repeat
XP_057764890.1 Pfam PF01535 PPR Repeat 252 277 4.5e-72 234.1 PPR repeat
XP_057764890.1 Pfam PF13812 PPR_3 Repeat 278 330 6.6e-41 138.9 Pentatricopeptide repeat domain
XP_057764890.1 Pfam PF12854 PPR_1 Repeat 284 313 4.4e-83 273.4 PPR repeat
XP_057764890.1 Pfam PF13041 PPR_2 Repeat 286 332 2.7e-94 309.8 PPR repeat family
XP_057764890.1 Pfam PF01535 PPR Repeat 288 318 4.5e-72 234.1 PPR repeat
XP_057764890.1 Pfam PF12854 PPR_1 Repeat 317 349 4.4e-83 273.4 PPR repeat
XP_057764890.1 Pfam PF01535 PPR Repeat 324 352 4.5e-72 234.1 PPR repeat
XP_057764890.1 Pfam PF13041 PPR_2 Repeat 355 404 2.7e-94 309.8 PPR repeat family
XP_057764890.1 Pfam PF12854 PPR_1 Repeat 388 414 4.4e-83 273.4 PPR repeat
XP_057764890.1 Pfam PF01535 PPR Repeat 393 414 4.5e-72 234.1 PPR repeat
XP_057764890.1 Pfam PF13041 PPR_2 Repeat 426 474 2.7e-94 309.8 PPR repeat family
XP_057764890.1 Pfam PF01535 PPR Repeat 429 457 4.5e-72 234.1 PPR repeat
XP_057764890.1 Pfam PF13812 PPR_3 Repeat 452 506 6.6e-41 138.9 Pentatricopeptide repeat domain
XP_057764890.1 Pfam PF12854 PPR_1 Repeat 456 488 4.4e-83 273.4 PPR repeat
XP_057764890.1 Pfam PF01535 PPR Repeat 464 490 4.5e-72 234.1 PPR repeat
XP_057764890.1 Pfam PF01535 PPR Repeat 497 526 4.5e-72 234.1 PPR repeat
XP_057764890.1 Pfam PF23276 TPR_24 Repeat 501 572 5.5e-27 95.0 Pentatricopeptide repeat-containing protein
XP_057764890.1 Pfam PF13812 PPR_3 Repeat 517 575 6.6e-41 138.9 Pentatricopeptide repeat domain
XP_057764890.1 Pfam PF12854 PPR_1 Repeat 529 557 4.4e-83 273.4 PPR repeat
XP_057764890.1 Pfam PF13041 PPR_2 Repeat 529 577 2.7e-94 309.8 PPR repeat family
XP_057764890.1 Pfam PF01535 PPR Repeat 531 561 4.5e-72 234.1 PPR repeat
XP_057764890.1 Pfam PF13041 PPR_2 Repeat 564 610 2.7e-94 309.8 PPR repeat family
XP_057764890.1 Pfam PF01535 PPR Repeat 566 596 4.5e-72 234.1 PPR repeat
XP_057764891.1 Pfam PF13812 PPR_3 Repeat 210 257 6.6e-41 138.9 Pentatricopeptide repeat domain
XP_057764891.1 Pfam PF13041 PPR_2 Repeat 213 261 2.7e-94 309.8 PPR repeat family
XP_057764891.1 Pfam PF01535 PPR Repeat 216 245 4.5e-72 234.1 PPR repeat
XP_057764891.1 Pfam PF17177 PPR_long Repeat 225 349 4.7e-30 105.3 Pentacotripeptide-repeat region of PRORP
XP_057764891.1 Pfam PF12854 PPR_1 Repeat 244 276 4.4e-83 273.4 PPR repeat
XP_057764891.1 Pfam PF01535 PPR Repeat 252 277 4.5e-72 234.1 PPR repeat
XP_057764891.1 Pfam PF13812 PPR_3 Repeat 278 330 6.6e-41 138.9 Pentatricopeptide repeat domain
XP_057764891.1 Pfam PF12854 PPR_1 Repeat 284 313 4.4e-83 273.4 PPR repeat
XP_057764891.1 Pfam PF13041 PPR_2 Repeat 286 332 2.7e-94 309.8 PPR repeat family
XP_057764891.1 Pfam PF01535 PPR Repeat 288 318 4.5e-72 234.1 PPR repeat
XP_057764891.1 Pfam PF12854 PPR_1 Repeat 317 349 4.4e-83 273.4 PPR repeat
XP_057764891.1 Pfam PF01535 PPR Repeat 324 352 4.5e-72 234.1 PPR repeat
XP_057764891.1 Pfam PF13041 PPR_2 Repeat 355 404 2.7e-94 309.8 PPR repeat family
XP_057764891.1 Pfam PF12854 PPR_1 Repeat 388 414 4.4e-83 273.4 PPR repeat
XP_057764891.1 Pfam PF01535 PPR Repeat 393 414 4.5e-72 234.1 PPR repeat
XP_057764891.1 Pfam PF13041 PPR_2 Repeat 426 474 2.7e-94 309.8 PPR repeat family
XP_057764891.1 Pfam PF01535 PPR Repeat 429 457 4.5e-72 234.1 PPR repeat
XP_057764891.1 Pfam PF13812 PPR_3 Repeat 452 506 6.6e-41 138.9 Pentatricopeptide repeat domain
XP_057764891.1 Pfam PF12854 PPR_1 Repeat 456 488 4.4e-83 273.4 PPR repeat
XP_057764891.1 Pfam PF01535 PPR Repeat 464 490 4.5e-72 234.1 PPR repeat
XP_057764891.1 Pfam PF01535 PPR Repeat 497 526 4.5e-72 234.1 PPR repeat
XP_057764891.1 Pfam PF23276 TPR_24 Repeat 501 572 5.5e-27 95.0 Pentatricopeptide repeat-containing protein
XP_057764891.1 Pfam PF13812 PPR_3 Repeat 517 575 6.6e-41 138.9 Pentatricopeptide repeat domain
XP_057764891.1 Pfam PF12854 PPR_1 Repeat 529 557 4.4e-83 273.4 PPR repeat
XP_057764891.1 Pfam PF13041 PPR_2 Repeat 529 577 2.7e-94 309.8 PPR repeat family
XP_057764891.1 Pfam PF01535 PPR Repeat 531 561 4.5e-72 234.1 PPR repeat
XP_057764891.1 Pfam PF13041 PPR_2 Repeat 564 610 2.7e-94 309.8 PPR repeat family
XP_057764891.1 Pfam PF01535 PPR Repeat 566 596 4.5e-72 234.1 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057908908.1
AATACTCATCCTAAATTCATTCACTCAAATAAAAGTTTGAAACTTGACGCTCAGCTCAAGCGAAGAATCGCGTACACAGCAGCCCCTTTAAATTTTATACAGCCGCCGCCCTCTTTCATCTTCGTCCCCTCCATAACCCCATTCTTCGCCTCTTGCACAAAAATATTCAACAACTGGAAGCAGATTCATCTTCATACTCTCTAATCCGGCGTCTGTATCACTTCCAATTTTCGAAACCGCCATGCTATGATCTGCAGTTC...
XM_057908907.1
TTGAAACTTGACGCTCAGCTCAAGCGAAGAATCGCGTACACAGCAGCCCCTTTAAATTTTATACAGCCGCCGCCCTCTTTCATCTTCGTCCCCTCCATAACCCCATTCTTCGCCTCTTGCACAAAAATATTCAACAACTGGAAGCAGATTCATCTTCATACTCTCTAATCCGGCGTCTGTATCACTTCCAATTTTCGAAACCGACAGGCCATGCTATGATCTGCAGTTCACTTTTTCTATGTTTTTTAGCCTATTTGCAT...

CDS

3 records

下载 CDS FASTA
LOC130985788
ATGTTTTTTAGCCTATTTGCATCAAAAAGGAGAAATGTTCTAGTCAGGGCCCTGCATTTTTGTAAGAAATTCACACCACCTGGTGCTGAAGATATAATCTTCAAGGCAATTTGTGTGAATATTAGACAGAAGAAATGGAAATTCTTGGATCAATGTTCTTCAAGTCTCACAACTACTTTGCTCCTGCGTATTTTTCGAGAGCTCCGCAGCTCTCCGCGGCTACTTTTGGAGTTCTACCAACGAGTGGGGGGAGTAGAAGT...
LOC130985788
ATGTTTTTTAGCCTATTTGCATCAAAAAGGAGAAATGTTCTAGTCAGGGCCCTGCATTTTTGTAAGAAATTCACACCACCTGGTGCTGAAGATATAATCTTCAAGGCAATTTGTGTGAATATTAGACAGAAGAAATGGAAATTCTTGGATCAATGTTCTTCAAGTCTCACAACTACTTTGCTCCTGCGTATTTTTCGAGAGCTCCGCAGCTCTCCGCGGCTACTTTTGGAGTTCTACCAACGAGTGGGGGGAGTAGAAGT...

Protein

3 records

下载 Protein FASTA
XP_057764889.1
MFFSLFASKRRNVLVRALHFCKKFTPPGAEDIIFKAICVNIRQKKWKFLDQCSSSLTTTLLLRIFRELRSSPRLLLEFYQRVGGVEVVSCSLESCCVLIHVMVECKNFDDALWLMKELMIAKGYLPLEVLEALIRSSNGGFPSSAVIDALVRSCTQIGATEDAYEVIKESRMVGIHVSIHAWNNFLGHLLKIGDVASFWAMYKEMVSYEYYESVNTYNLLIYALCKESQLSEALSVFYRMIKAGFLPNIVGFNMLIDGAC...
XP_057764890.1
MFFSLFASKRRNVLVRALHFCKKFTPPGAEDIIFKAICVNIRQKKWKFLDQCSSSLTTTLLLRIFRELRSSPRLLLEFYQRVGGVEVVSCSLESCCVLIHVMVECKNFDDALWLMKELMIAKGYLPLEVLEALIRSSNGGFPSSAVIDALVRSCTQIGATEDAYEVIKESRMVGIHVSIHAWNNFLGHLLKIGDVASFWAMYKEMVSYEYYESVNTYNLLIYALCKESQLSEALSVFYRMIKAGFLPNIVGFNMLIDGAC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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