当前解析结果
SmilChr05G001085| 统一新 Gene ID | SmilChr05G001085 |
|---|---|
| 名称 | SmilChr05G001085 |
| 描述 | starch synthase 3, chloroplastic/amyloplastic |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 9025666 - 9036993 / + |
| NCBI Gene ID | LOC131025489 |
|---|---|
| GeneID | 131025489 |
| locus_tag | - |
| NCBI Name | LOC131025489 |
| 原始查询 | SmilChr05G001085 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | starch synthase 3, chloroplastic/amyloplastic |
| 产物 | starch synthase 3%2C chloroplastic/amyloplastic |
| Arabidopsis | AT1G11720 (SS3)starch synthase 3 [Source:NCBI gene (formerly Entrezgene);Acc:837716] identity=72.9; qcov=0.772; evalue=0; confidence=high |
| Rice | Os04g0624600 (SSIIIB)- identity=57.5; qcov=0.983; evalue=0; confidence=high |
| GO | GO:0004373 (alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity); GO:2001070 (starch binding) |
| KEGG | smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF08323 (Glyco_transf_5); PF13439 (Glyco_transf_4); PF16760 (CBM53) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025489 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057811266.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 0.60000 | XP_057811266.1 |
| 3 | Chloroplast stroma | 叶绿体基质 | 0.60000 | XP_057811266.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057811266.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057811266.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:9025737 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B54,C26 |
Chr5:9026625 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C65,D11 |
Chr5:9027530 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B22,B3,C4,C83 |
Chr5:9027673 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr5:9028960 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr5:9029061 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B54,C26 |
Chr5:9029065 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr5:9029333 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:9029430 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,B138,B18,B97,D10 |
Chr5:9032638 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr5:9032827 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:9032886 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811266.1PF16760
CBM53 325-384 aa
PF16760
CBM53 501-562 aa
PF16760
CBM53 662-724 aa
PF08323
Glyco_transf_5 758-946 aa
PF13439
Glyco_transf_4 772-968 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811266.1 |
Pfam | PF16760 |
CBM53 | Family | 325 | 384 | 3.2e-39 | 133.7 | Starch/carbohydrate-binding module (family 53) |
XP_057811266.1 |
Pfam | PF16760 |
CBM53 | Family | 501 | 562 | 3.2e-39 | 133.7 | Starch/carbohydrate-binding module (family 53) |
XP_057811266.1 |
Pfam | PF16760 |
CBM53 | Family | 662 | 724 | 3.2e-39 | 133.7 | Starch/carbohydrate-binding module (family 53) |
XP_057811266.1 |
Pfam | PF08323 |
Glyco_transf_5 | Domain | 758 | 946 | 1.3e-48 | 166.6 | Starch synthase catalytic domain |
XP_057811266.1 |
Pfam | PF13439 |
Glyco_transf_4 | Domain | 772 | 968 | 8.5e-10 | 39.6 | Glycosyltransferase Family 4 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。