Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001111`

染色体: Chr05 坐标: 9276532-9279402 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001111`
名称	SmilChr05G001111
描述	protein THYLAKOID ASSEMBLY 8-like, chloroplastic
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	9276532 - 9279402 / `-`

ID 对照

NCBI Gene ID	`LOC130985818`
GeneID	`130985818`
locus_tag	`-`
NCBI Name	`LOC130985818`
原始查询	`SmilChr05G001111`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein THYLAKOID ASSEMBLY 8-like, chloroplastic
产物	protein THYLAKOID ASSEMBLY 8-like%2C chloroplastic
Arabidopsis	`AT3G46870` (AT3G46870) Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:823840] identity=75.4; qcov=0.774; evalue=2.76e-110; confidence=high
Rice	`Os07g0549200` (P0534A03.122) - identity=70.7; qcov=0.809; evalue=3.26e-106; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130985818

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057764940.1`
2	Chloroplast	叶绿体	0.60000	`XP_057764940.1`
3	Nucleus	细胞核	0.00000	`XP_057764940.1`
4	Chromosome	染色体	0.00000	`XP_057764940.1`
5	Centromere	着丝粒	0.00000	`XP_057764940.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:9277938`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr5:9277973`	`CT`	`C`	1bp_deletion	frameshift_variant	136	A10,A15,A19,A2,A20,A21,A22,A24,A3,A4,A7,B100,B101,B103,B107,B108,B11,B110,B111,B113,B117,B119,B121,B123,B126,B127,B13,B131,B133,B135,B136,B137,B138,B139,B14,B140,B15,B16,B18,B20,B21,B22,B23,B24,B25,B28,B31,B33,B36,B38,B39,B40,B41,B43,B52,B54,B55,B56,B58,B6,B60,B62,B65,B66,B68,B69,B7,B70,B71,B72,B73,B78,B8,B83,B84,B89,B90,B94,B95,B96,C13,C14,C15,C16,C18,C19,C2,C20,C21,C24,C28,C29,C3,C31,C34,C35,C38,C4,C41,C43,C45,C47,C52,C53,C54,C55,C56,C58,C59,C6,C61,C62,C63,C64,C66,C67,C68,C69,C7,C70,C75,C76,C77,C78,C79,C80,C81,C83,C85,C87,C9,D2,D4,D5,D6,D7
`Chr5:9277983`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B13,C38
`Chr5:9278005`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr5:9278765`	`TC`	`T`	1bp_deletion	frameshift_variant	221	A1,A10,A11,A15,A18,A19,A2,A20,A21,A22,A23,A24,A3,A4,A5,A6,A7,B1,B10,B100,B101,B103,B104,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B117,B118,B119,B12,B121,B122,B123,B124,B125,B126,B127,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B20,B21,B22,B23,B24,B25,B27,B28,B3,B30,B31,B32,B33,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B81,B82,B83,B84,B85,B87,B88,B90,B91,B92,B93,B94,B95,B96,B99,C1,C10,C11,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C24,C25,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C47,C5,C50,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C80,C81,C82,C83,C85,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D9
`Chr5:9278794`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C73,D6
`Chr5:9278848`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr5:9278932`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr5:9278945`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A2,C80
`Chr5:9278987`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B44,B93,C44
`Chr5:9278988`	`GA`	`G`	1bp_deletion	frameshift_variant	220	A1,A10,A11,A15,A18,A19,A2,A20,A21,A22,A23,A24,A3,A4,A5,A7,A8,B1,B10,B100,B101,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B117,B118,B119,B12,B121,B122,B123,B124,B125,B126,B127,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B20,B21,B22,B23,B24,B25,B27,B28,B3,B30,B31,B32,B33,B35,B36,B37,B38,B39,B40,B41,B42,B43,B44,B45,B46,B48,B49,B52,B53,B54,B55,B56,B57,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B75,B76,B77,B78,B79,B8,B81,B82,B83,B84,B85,B88,B89,B90,B91,B92,B93,B94,B95,B96,B98,B99,C1,C10,C11,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C24,C25,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C37,C38,C39,C4,C41,C42,C43,C44,C45,C47,C49,C5,C50,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C80,C81,C82,C83,C85,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D9
`Chr5:9279001`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,A2,A4,B30,C19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764940.1

263 aa

132

263

TPR_24

PPR_2

PPR

PPR_3

PPR

PF23276 TPR_24 117-192 aa PF13041 PPR_2 147-194 aa PF01535 PPR 152-179 aa PF13812 PPR_3 172-213 aa PF01535 PPR 186-213 aa

XP_057764941.1

257 aa

128

257

PPR_2

PPR

PPR_3

PPR

PF13041 PPR_2 141-188 aa PF01535 PPR 146-173 aa PF13812 PPR_3 167-207 aa PF01535 PPR 180-207 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764940.1`	Pfam	`PF23276`	TPR_24	Repeat	117	192	1.2e-05	25.9	Pentatricopeptide repeat-containing protein
`XP_057764940.1`	Pfam	`PF13041`	PPR_2	Repeat	147	194	2.2e-16	60.4	PPR repeat family
`XP_057764940.1`	Pfam	`PF01535`	PPR	Repeat	152	179	2.4e-09	37.5	PPR repeat
`XP_057764940.1`	Pfam	`PF13812`	PPR_3	Repeat	172	213	5.7e-07	30.2	Pentatricopeptide repeat domain
`XP_057764940.1`	Pfam	`PF01535`	PPR	Repeat	186	213	2.4e-09	37.5	PPR repeat
`XP_057764941.1`	Pfam	`PF13041`	PPR_2	Repeat	141	188	1.6e-14	54.4	PPR repeat family
`XP_057764941.1`	Pfam	`PF01535`	PPR	Repeat	146	173	2.8e-08	34.2	PPR repeat
`XP_057764941.1`	Pfam	`PF13812`	PPR_3	Repeat	167	207	1.6e-06	28.8	Pentatricopeptide repeat domain
`XP_057764941.1`	Pfam	`PF01535`	PPR	Repeat	180	207	2.8e-08	34.2	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908957.1
TATCTTAAAATTCTTTGAAAATTTCTCCTAAAATCTCATTAAAGTTAAAATCGGGTATTACATATGAAGACTTTGCCTTCCGAAAAATTAAAGGGCGACGACAAACGGAGATGTGGGCATCTCTTAAAACATTTTTTCAAGGTTAAAATTTAACTTTCATTTTATAAATCGTAGAATTAACGATCGGTTAAAACCCCAATTCTTGTCCTTCTCTTAAACCCTTCCTTCTCCCGTAGCCTCCACTCCCGCCGGAGAATGCA...

XM_057908958.1
CTTTGCCTTCCGAAAAATTAAAGGGCGACGACAAACGGAGATGTGGGCATCTCTTAAAACATTTTTTCAAGGTTAAAATTTAACTTTCATTTTATAAATCGTAGAATTAACGATCGGTTAAAACCCCAATTCTTGTCCTTCTCTTAAACCCTTCCTTCTCCCGTAGCCTCCACTCCCGCCGGAGAATGCAATTCGCCGGCATATTGTCAAGATCCAGCGCGCGATGTATCGCTGCCGCATCCCTATTAGCCAATCACTTG...

CDS

2 records

下载 CDS FASTA

LOC130985818
ATGCAATTCGCCGGCATATTGTCAAGATCCAGCGCGCGATGTATCGCTGCCGCATCCCTATTAGCCAATCACTTGTTATTATCGAAATCCCTCCGCAGCTCCATAACCCCTCTTCTATTTTCTCCATCGCCACTACAATCAACCATCAGCAATGGATTTCGGCCGAAATGGGGCTGCGACCGGGCCTACCACGACGGCAGGCCGAGAGGCCCGTTGTGGAGAGGGAAGAAGCTCATCGGGAAGGAGGCGCTCTTCGTTAT...

Protein

2 records

下载 Protein FASTA

XP_057764940.1
MQFAGILSRSSARCIAAASLLANHLLLSKSLRSSITPLLFSPSPLQSTISNGFRPKWGCDRAYHDGRPRGPLWRGKKLIGKEALFVILGMKRFKDENEKLDKFIKTHVLRLLKMDMVAVLTELERQGEVSLAVKMFKVIKKQVWYKPDVYLYKDLIVALARRKKMDDAMDLWQSMRQEDLFPDSQTYTEVIRGFLQYGSPADAMNIYEDMKKSPDLPEQLPFRILLKGLLPHPLLRNKVKQDFEEIFPDQRVYDPPEEIF...

XP_057764941.1
MQFAGILSRSSARCIAAASLLANHLLLSKSLRSSITPLLFSPSPLQSTISNGFRPKWGCDRAYHDGRPRGPLWRGKKLIGKEALFVILGMKRFKDENEKLDKFIKTHVLRLLKMDMVAVLTELERQGEMFKVIKKQVWYKPDVYLYKDLIVALARRKKMDDAMDLWQSMRQEDLFPDSQTYTEVIRGFLQYGSPADAMNIYEDMKKSPDLPEQLPFRILLKGLLPHPLLRNKVKQDFEEIFPDQRVYDPPEEIFGLR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器