Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001119`

染色体: Chr05 坐标: 9333670-9336138 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001119`
名称	SmilChr05G001119
描述	uncharacterized SmilChr05G001119
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	9333670 - 9336138 / `-`

ID 对照

NCBI Gene ID	`LOC130985823`
GeneID	`130985823`
locus_tag	`-`
NCBI Name	`LOC130985823`
原始查询	`SmilChr05G001119`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	extracellular ligand-gated ion channel protein (DUF3537) [Source:NCBI gene (formerly Entrezgene);Acc:821574]; symbol=AT3G20300; hit=AT3G20300; species=arabidopsis; confidence=high
产物	extracellular ligand-gated ion channel protein (DUF3537) [Source:NCBI gene (formerly Entrezgene);Acc:821574]; symbol=AT3G20300; hit=AT3G20300; species=arabidopsis; confidence=high
Arabidopsis	`AT3G20300` (AT3G20300) extracellular ligand-gated ion channel protein (DUF3537) [Source:NCBI gene (formerly Entrezgene);Acc:821574] identity=58.5; qcov=0.993; evalue=1.11e-174; confidence=high
Rice	`Os06g0635200` - identity=47.1; qcov=0.963; evalue=2.49e-121; confidence=high
GO	-
KEGG	-
Pfam	PF12056 (DUF3537)
InterPro	-
eggNOG	-
NR	GeneID:130985823

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole membrane	液泡膜	1.00000	`XP_057764949.1`
2	Vacuole	液泡	0.60000	`XP_057764949.1`
3	Nucleus	细胞核	0.00000	`XP_057764949.1`
4	Chromosome	染色体	0.00000	`XP_057764949.1`
5	Centromere	着丝粒	0.00000	`XP_057764949.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:9334661`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr5:9335209`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:9335219`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr5:9335261`	`C`	`CGA`	2bp_insertion	frameshift_variant	1	B49
`Chr5:9335261`	`C`	`CGA`	2bp_insertion	CDS_variant	1	B49
`Chr5:9335291`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A11,B119,B68,B7,C48
`Chr5:9335425`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764949.1

432 aa

216

432

DUF3537

PF12056 DUF3537 30-416 aa

XP_057764950.1

432 aa

216

432

DUF3537

PF12056 DUF3537 30-416 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764949.1`	Pfam	`PF12056`	DUF3537	Family	30	416	2e-164	547.8	Protein of unknown function (DUF3537)
`XP_057764950.1`	Pfam	`PF12056`	DUF3537	Family	30	416	2e-164	547.8	Protein of unknown function (DUF3537)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908967.1
ATCTAGATTAAACCCCCAACATATATAGGAGTAATAAATTAACATTTAGTTCAATCAACATTTGACAAAGTTGCTGAACGCATACGCTATAAAATTTCAATTTGCCACCTGGATTTCTCTTTACTCTACCATTTGACGATCAGAAGACAGCTTGACTCAGTTCAAGAAATTCATTCGTCGCCATGTTTTAGGTTTTTTCCATAATTGGGGAAAAATGGAGGCAGAAGTGGTAGAGGTGCTGCTGCCCAAGAAGAAAGCGA...

XM_057908966.1
GGAGTAATAAATTAACATTTAGTTCAATCAACATTTGACAAAGTTGCTGAACGCATACGCTATAAAATTTCAATTTGCCACCTGGATTTCTCTTTACTCTACCATTTGACGATCAGAAGACAGCTTGACTCAGTTCAAGAAATTCATTCGTCGCCATGTTTTAGGTAATAGTAATAAGCAAGCCACACGTCATCGCCTTTAGCATTCTTTTATTCGACAAAACTAAAATAGTTTTTGATCGGTTCCACAATTCATAAAAA...

CDS

2 records

下载 CDS FASTA

LOC130985823
ATGGAGGCAGAAGTGGTAGAGGTGCTGCTGCCCAAGAAGAAAGCGAATTATATATCGCGTGGAGATTCTTGGAATGAAGCGAATCTGGAGCTGAAGAGCTACGGATCAGGTCTGAAATGGGTGTTTCTAGATTATTCTAGTTTGTGGCGAGCTGGGCTGTCGTGGTCCGTGTTTTTTGTGCTGAATATCGGCGTCCCGCTCGTATCCCACTTCGTATTCTCTTGTTCCGACTGCGATCCCAGCCATCAGAGGCCCTTCGA...

Protein

2 records

下载 Protein FASTA

XP_057764949.1
MEAEVVEVLLPKKKANYISRGDSWNEANLELKSYGSGLKWVFLDYSSLWRAGLSWSVFFVLNIGVPLVSHFVFSCSDCDPSHQRPFDAITQLSLSLFAAISFLSISSFSRKYGLRRFLFLNRLSEESDKVRQHYTLQLHRSMKLLSAFVLPCFLVDSVYKIWWLSTGGEQIPYVYNIYLSKVIVCILLMCSWLYRISICFLVCVFFSLTCYLQLLRLDDFAQVFERESDVAAILVEHLSIRRNLRIISHRFRLFILSTLI...

XP_057764950.1
MEAEVVEVLLPKKKANYISRGDSWNEANLELKSYGSGLKWVFLDYSSLWRAGLSWSVFFVLNIGVPLVSHFVFSCSDCDPSHQRPFDAITQLSLSLFAAISFLSISSFSRKYGLRRFLFLNRLSEESDKVRQHYTLQLHRSMKLLSAFVLPCFLVDSVYKIWWLSTGGEQIPYVYNIYLSKVIVCILLMCSWLYRISICFLVCVFFSLTCYLQLLRLDDFAQVFERESDVAAILVEHLSIRRNLRIISHRFRLFILSTLI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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