Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001121`

染色体: Chr05 坐标: 9346897-9355384 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001121`
名称	SmilChr05G001121
描述	E3 ubiquitin-protein ligase COP1-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	9346897 - 9355384 / `+`

ID 对照

NCBI Gene ID	`LOC130985826`
GeneID	`130985826`
locus_tag	`-`
NCBI Name	`LOC130985826`
原始查询	`SmilChr05G001121`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase COP1-like
产物	E3 ubiquitin-protein ligase COP1-like
Arabidopsis	`AT2G32950` (COP1) Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817857] identity=68.1; qcov=0.97; evalue=0; confidence=high
Rice	`Os02g0771100` (PPS) - identity=65.8; qcov=0.993; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process); GO:0061630 (ubiquitin protein ligase activity)
KEGG	smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage)); smil04712 (Circadian rhythm - plant - Salvia miltiorrhiza (redroot sage))
Pfam	PF00097 (zf-C3HC4); PF00400 (WD40); PF13923 (zf-C3HC4_2); PF23098 (Beta-prop_NOL10_N)
InterPro	-
eggNOG	-
NR	GeneID:130985826

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057764956.1`
2	Cytoplasm	细胞质	0.60000	`XP_057764956.1`
3	Nucleoplasm	核质	0.40000	`XP_057764956.1`
4	Cytosol	细胞质基质	0.40000	`XP_057764957.1`
5	Nuclear body	核内小体	0.20000	`XP_057764957.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:9347306`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B27,B55,B7,B9
`Chr5:9349703`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr5:9351188`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr5:9351354`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr5:9351355`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:9353960`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764956.1

668 aa

334

668

zf-C3HC4

zf-C3HC4_2

WD40

Beta-prop_NOL10_N

WD40

PF00097 zf-C3HC4 46-83 aa PF13923 zf-C3HC4_2 46-83 aa PF00400 WD40 448-484 aa PF23098 Beta-prop_NOL10_N 461-634 aa PF00400 WD40 533-569 aa

XP_057764957.1

537 aa

268

537

zf-C3HC4

zf-C3HC4_2

WD40

PF00097 zf-C3HC4 46-83 aa PF13923 zf-C3HC4_2 46-83 aa PF00400 WD40 362-391 aa PF00400 WD40 448-484 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764956.1`	Pfam	`PF00097`	zf-C3HC4	Domain	46	83	1.4e-08	35.2	Zinc finger, C3HC4 type (RING finger)
`XP_057764956.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	46	83	1.3e-10	41.6	Zinc finger, C3HC4 type (RING finger)
`XP_057764956.1`	Pfam	`PF00400`	WD40	Repeat	448	484	3e-28	97.7	WD domain, G-beta repeat
`XP_057764956.1`	Pfam	`PF23098`	Beta-prop_NOL10_N	Repeat	461	634	2.9e-09	37.3	Nucleolar protein 10-like, N-terminal domain
`XP_057764956.1`	Pfam	`PF00400`	WD40	Repeat	533	569	3e-28	97.7	WD domain, G-beta repeat
`XP_057764957.1`	Pfam	`PF00097`	zf-C3HC4	Domain	46	83	9.4e-09	35.7	Zinc finger, C3HC4 type (RING finger)
`XP_057764957.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	46	83	9.2e-11	42.1	Zinc finger, C3HC4 type (RING finger)
`XP_057764957.1`	Pfam	`PF00400`	WD40	Repeat	362	391	1.1e-11	45.4	WD domain, G-beta repeat
`XP_057764957.1`	Pfam	`PF00400`	WD40	Repeat	448	484	1.1e-11	45.4	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908973.1
AATAAAATTGAGTATTGAGTGTAGAGAGAGAGAGTGTTTGTGGTATTGACTGACAACAAATAACAACTTACAAGTACGAGTGTGGGTGGAATCTAAAAACAAAAGCCCGCCTAACGTGGTCACTTCTCGCCCATACAAATATGTCTTTCTCTTCTTCAGAAAACAAAAAAAATAACACACTTCACACGCACTAACCGTTTCCGCCTCTCCTTCCTTTAATCACACGTAAATTCACGCCTATACATACACACCCCCCCCCC...

XM_057908974.1
TACAAATATGTCTTTCTCTTCTTCAGAAAACAAAAAAAATAACACACTTCACACGCACTAACCGTTTCCGCCTCTCCTTCCTTTAATCACACGTAAATTCACGCCTATACATACACACCCCCCCCCCCCCCCTCATACTCATACCTCACGTAGACCTACTCGGACCAGAATTTGAAGGATTCTTCGCGGATTCTGCGCAAAATGGGAGCCGATACCACTTCAATTGGCGGCGCTCTGGTGCCTACCATCATCAAGTCCGA...

CDS

2 records

下载 CDS FASTA

LOC130985826
ATGGGAGCCGATACCACTTCAATTGGCGGCGCTCTGGTGCCTACCATCATCAAGTCCGAGCCGTCGGATTCTTCCGCCGGAGCGCCGTCGCCGCCGCAGTCGGAGATGGAGCAGGAGTCGGATAAGGACATCCTCTGCCCTATTTGCATGCAGATCATAAAGGACGCCTTTCTCACAGCGTGTGGTCATAGTTTTTGCTATATGTGTATCGTCACTCATCTTCAGAACAAGAGTGATTGCCCCTGTTGCTCTCATTTCCT...

Protein

2 records

下载 Protein FASTA

XP_057764956.1
MGADTTSIGGALVPTIIKSEPSDSSAGAPSPPQSEMEQESDKDILCPICMQIIKDAFLTACGHSFCYMCIVTHLQNKSDCPCCSHFLTSNHLYPNFLLNKLLMKTSARQTAKTATPLEQLRQALERGCEASVKDLESLMSLLSEKKSKMEQEEAETNLQILLDFMLRLRKKKLDELNEIQSDLQYIKEDIHAVERRRIELYRRRDRYSAKLRMLGDDPSSKSARPSVVDKHSGATASRPGQSRLTSGDLQNKKADAKSSA...

XP_057764957.1
MGADTTSIGGALVPTIIKSEPSDSSAGAPSPPQSEMEQESDKDILCPICMQIIKDAFLTACGHSFCYMCIVTHLQNKSDCPCCSHFLTSNHLYPNFLLNKLLMKTSARQTAKTATPLEQLRQALERGCEASVKDLESLMSLLSEKKSKMEQEEAETNLQILLDFMLRLRKKKLDELNEIQSDLQYIKEDIHAVERRRIELYRRRDRYSAKLRMLGDDPSSKSARPSVVDKHSGATASRPGQSRLTSGDLQNKKADAKSSA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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