Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001125`

染色体: Chr05 坐标: 9399158-9400427 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001125`
名称	SmilChr05G001125
描述	uncharacterized SmilChr05G001125
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	9399158 - 9400427 / `-`

ID 对照

NCBI Gene ID	`LOC130985829`
GeneID	`130985829`
locus_tag	`-`
NCBI Name	`LOC130985829`
原始查询	`SmilChr05G001125`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825707]; symbol=AT4G03965; hit=AT4G03965; species=arabidopsis; confidence=high
产物	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825707]; symbol=AT4G03965; hit=AT4G03965; species=arabidopsis; confidence=high
Arabidopsis	`AT4G03965` (AT4G03965) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825707] identity=50.7; qcov=1.08; evalue=8.58e-55; confidence=high
Rice	`Os01g0917900` - identity=80; qcov=0.262; evalue=1.05e-23; confidence=weak
GO	-
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF13920 (zf-C3HC4_3); PF13923 (zf-C3HC4_2)
InterPro	-
eggNOG	-
NR	GeneID:130985829

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057764960.1`
2	Cytoplasm	细胞质	0.20000	`XP_057764960.1`
3	Cell membrane	细胞膜	0.20000	`XP_057764960.1`
4	Chromosome	染色体	0.00000	`XP_057764960.1`
5	Centromere	着丝粒	0.00000	`XP_057764960.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:9399546`	`GC`	`G`	1bp_deletion	frameshift_variant	93	A14,A20,A21,A23,A24,A6,A9,B1,B103,B105,B108,B109,B114,B117,B121,B122,B123,B127,B128,B131,B132,B133,B136,B137,B138,B140,B16,B21,B23,B24,B27,B3,B31,B32,B37,B44,B45,B46,B48,B5,B53,B55,B59,B64,B69,B70,B73,B74,B76,B78,B80,B89,B91,B93,B97,B98,C13,C14,C15,C18,C20,C23,C29,C30,C32,C33,C35,C41,C42,C44,C49,C5,C53,C57,C59,C6,C64,C65,C68,C74,C75,C76,C77,C8,C81,C83,C85,C86,C87,D1,D4,D7,D8
`Chr5:9399623`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:9399803`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B134,B49,C44,D7
`Chr5:9399851`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr5:9399860`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764960.1

191 aa

191

zf-C3HC4_3

zf-C3HC4

zf-C3HC4_2

PF13920 zf-C3HC4_3 142-185 aa PF00097 zf-C3HC4 143-180 aa PF13923 zf-C3HC4_2 143-180 aa

XP_057764961.1

191 aa

191

zf-C3HC4_3

zf-C3HC4

zf-C3HC4_2

PF13920 zf-C3HC4_3 142-185 aa PF00097 zf-C3HC4 143-180 aa PF13923 zf-C3HC4_2 143-180 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764960.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	142	185	1.3e-11	44.8	Zinc finger, C3HC4 type (RING finger)
`XP_057764960.1`	Pfam	`PF00097`	zf-C3HC4	Domain	143	180	9e-07	29.4	Zinc finger, C3HC4 type (RING finger)
`XP_057764960.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	143	180	8e-07	29.5	Zinc finger, C3HC4 type (RING finger)
`XP_057764961.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	142	185	1.3e-11	44.8	Zinc finger, C3HC4 type (RING finger)
`XP_057764961.1`	Pfam	`PF00097`	zf-C3HC4	Domain	143	180	9e-07	29.4	Zinc finger, C3HC4 type (RING finger)
`XP_057764961.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	143	180	8e-07	29.5	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908978.1
TTCTACTATGAAGTAATCAAGGAATTATCAAAACTTTATACTTTATATTCATACAACTAATTAAAGTCTTTGTCCTAATCACCCCACAAAAATTGTTATCTCTCTCTCTCTTTCTATCTTTCCACTTGTTCTATTTTGTCTTTTGTTCCTTCTTCATATCTCCAACAACGAAAATATTCCCTCTCTCGCTGGCAAACGCTCCTTTTTATTGACTTTCAAATCCTGATCGGACCACCGCGCGCCGCCGTTGCTGTATTGAT...

XM_057908977.1
CTACTATGAAGTAATCAAGGAATTATCAAAACTTTATACTTTATATTCATACAACTAATTAAAGTCTTTGTCCTAATCACCCCACAAAAATTGTTATCTCTCTCTCTCTTTCTATCTTTCCACTTGTTCTATTTTGTCTTTTGTTCCTTCTTCATATCTCCAACAACGAAAATATTCCCTCTCTCGCTGGCAAACGCTCCTTTTTATTGACTTTCAAATCCTGATCGGACCACCGCGCGCCGCCGTTGCTGTATTGATCA...

CDS

2 records

下载 CDS FASTA

LOC130985829
ATGGACGGCGTGGATCGGGCGGTGAGAAGGCCGAGTCTCAAGGAACGGCTGGGATTGAAGGGGCTGGGCTGCTGCGGGCCGACGTGGGGCCTGGGCCCCACCACCATGAGCGTGCGGGATGATGAAGAAGAAGAAGAAGATGGGCCTGGAGCAGAAACCGAGACCGTCAACGCGGCCCACAATCCAATCCAAAGCGGGCCGATGATTCCGCCGTGCGTGGCCCAGTCTCCCGGGATGAACCTGGCGGCGGCGCTGGCCGC...

Protein

2 records

下载 Protein FASTA

XP_057764960.1
MDGVDRAVRRPSLKERLGLKGLGCCGPTWGLGPTTMSVRDDEEEEEDGPGAETETVNAAHNPIQSGPMIPPCVAQSPGMNLAAALAAERQLRAALEFDIGGGGLSPRARASPGNARRVSLMRLLEETDGCGDGRKEGESDWVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIY

XP_057764961.1
MDGVDRAVRRPSLKERLGLKGLGCCGPTWGLGPTTMSVRDDEEEEEDGPGAETETVNAAHNPIQSGPMIPPCVAQSPGMNLAAALAAERQLRAALEFDIGGGGLSPRARASPGNARRVSLMRLLEETDGCGDGRKEGESDWVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIY

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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