当前解析结果
SmilChr05G001131| 统一新 Gene ID | SmilChr05G001131 |
|---|---|
| 名称 | SmilChr05G001131 |
| 描述 | uncharacterized SmilChr05G001131 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 9454866 - 9460930 / + |
| NCBI Gene ID | LOC130985834 |
|---|---|
| GeneID | 130985834 |
| locus_tag | - |
| NCBI Name | LOC130985834 |
| 原始查询 | SmilChr05G001131 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825733]; symbol=AT4G04180; hit=AT4G04180; species=arabidopsis; confidence=high |
| 产物 | P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825733]; symbol=AT4G04180; hit=AT4G04180; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G04180 (AT4G04180)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825733] identity=57.8; qcov=0.919; evalue=0; confidence=high |
| Rice | Os02g0740300- identity=58.5; qcov=0.782; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0008540 (proteasome regulatory particle, base subcomplex); GO:0016887 (ATP hydrolysis activity); GO:0036402 (proteasome-activating activity); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF07728 (AAA_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985834 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057764967.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057764967.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 1.00000 | XP_057764967.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057764967.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057764967.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:9455151 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr5:9456843 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr5:9456851 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B108,B140,B76,C53,C85 |
Chr5:9456884 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B130,B55 |
Chr5:9456956 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B105,B121,B16,B69,C30 |
Chr5:9457031 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B132,B9 |
Chr5:9457995 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B16,D11 |
Chr5:9458088 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B111,B125,B77,C19,C58 |
Chr5:9458777 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B130,B55 |
Chr5:9460133 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B108,B140,B76,C53,C85 |
Chr5:9460348 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B130,B55 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764967.1PF07728
AAA_5 382-503 aa
PF00004
AAA 382-509 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764967.1 |
Pfam | PF07728 |
AAA_5 | Domain | 382 | 503 | 1.3e-08 | 35.7 | AAA domain (dynein-related subfamily) |
XP_057764967.1 |
Pfam | PF00004 |
AAA | Domain | 382 | 509 | 1.3e-36 | 126.7 | ATPase family associated with various cellular activities (AAA) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。