Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001143`

染色体: Chr05 坐标: 9550709-9559534 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001143`
名称	SmilChr05G001143
描述	calcium permeable stress-gated cation channel 1
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	9550709 - 9559534 / `+`

ID 对照

NCBI Gene ID	`LOC130985844`
GeneID	`130985844`
locus_tag	`-`
NCBI Name	`LOC130985844`
原始查询	`SmilChr05G001143`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calcium permeable stress-gated cation channel 1
产物	calcium permeable stress-gated cation channel 1
Arabidopsis	`AT4G22120` (AT4G22120) ERD (early-responsive to dehydration stress) family protein [Source:NCBI gene (formerly Entrezgene);Acc:828301] identity=76.2; qcov=0.984; evalue=0; confidence=high
Rice	`Os01g0534900` (OsOSCA1.1) - identity=73.5; qcov=0.984; evalue=0; confidence=high
GO	GO:0005227 (calcium-activated cation channel activity); GO:0005886 (plasma membrane)
KEGG	-
Pfam	PF02714 (RSN1_7TM); PF13967 (RSN1_TM); PF14703 (PHM7_cyt)
InterPro	-
eggNOG	-
NR	GeneID:130985844

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057764984.1`
2	Nucleus	细胞核	0.00000	`XP_057764984.1`
3	Chromosome	染色体	0.00000	`XP_057764984.1`
4	Centromere	着丝粒	0.00000	`XP_057764984.1`
5	Chromatin	染色质	0.00000	`XP_057764984.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:9551873`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr5:9551976`	`AG`	`A`	1bp_deletion	frameshift_variant	1	C85
`Chr5:9551976`	`AG`	`A`	1bp_deletion	CDS_variant	1	C85
`Chr5:9552008`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B102,B76,C27,C63
`Chr5:9552013`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:9552448`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr5:9552470`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,B107,C79
`Chr5:9552498`	`TA`	`T`	1bp_deletion	frameshift_variant	3	A19,B52,D2
`Chr5:9552498`	`TA`	`T`	1bp_deletion	CDS_variant	3	A19,B52,D2
`Chr5:9552502`	`A`	`AG`	1bp_insertion	frameshift_variant	3	A19,B52,D2
`Chr5:9552502`	`A`	`AG`	1bp_insertion	CDS_variant	3	A19,B52,D2
`Chr5:9552509`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A19,B52,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764984.1

772 aa

386

772

RSN1_TM

PHM7_cyt

RSN1_7TM

PF13967 RSN1_TM 7-181 aa PF14703 PHM7_cyt 202-364 aa PF02714 RSN1_7TM 375-647 aa

XP_057764985.1

772 aa

386

772

RSN1_TM

PHM7_cyt

RSN1_7TM

PF13967 RSN1_TM 7-181 aa PF14703 PHM7_cyt 202-364 aa PF02714 RSN1_7TM 375-647 aa

XP_057764986.1

615 aa

308

615

PHM7_cyt

RSN1_7TM

PF14703 PHM7_cyt 45-207 aa PF02714 RSN1_7TM 218-490 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764984.1`	Pfam	`PF13967`	RSN1_TM	Family	7	181	3.9e-43	147.5	Late exocytosis, associated with Golgi transport
`XP_057764984.1`	Pfam	`PF14703`	PHM7_cyt	Domain	202	364	1.9e-47	162.4	Cytosolic domain of 10TM putative phosphate transporter
`XP_057764984.1`	Pfam	`PF02714`	RSN1_7TM	Family	375	647	4.5e-85	286.1	Calcium-dependent channel, 7TM region, putative phosphate
`XP_057764985.1`	Pfam	`PF13967`	RSN1_TM	Family	7	181	3.9e-43	147.5	Late exocytosis, associated with Golgi transport
`XP_057764985.1`	Pfam	`PF14703`	PHM7_cyt	Domain	202	364	1.9e-47	162.4	Cytosolic domain of 10TM putative phosphate transporter
`XP_057764985.1`	Pfam	`PF02714`	RSN1_7TM	Family	375	647	4.5e-85	286.1	Calcium-dependent channel, 7TM region, putative phosphate
`XP_057764986.1`	Pfam	`PF14703`	PHM7_cyt	Domain	45	207	1.3e-47	163.0	Cytosolic domain of 10TM putative phosphate transporter
`XP_057764986.1`	Pfam	`PF02714`	RSN1_7TM	Family	218	490	5.9e-85	285.7	Calcium-dependent channel, 7TM region, putative phosphate

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057909001.1
ATTAATTCAAACCGCGCCAAATTAAGTAAAAAAGAAATAAATTTCATACATGTGCGAAAATATGTTTTTGTTTTATTTTTATTTCTCGAAGTAACGATTTACTCATTAATTGCAAATTTGTACATCTGGGGAAACTGAAGACGTAACTATCAGGCAAACAAGAATCGATTGATAGAAAATCAGTGAGAGAAAAAAAAGTGGCAGTAGCCAACAAATCCCACTCCAAATCTGAAGAATCTCCATCGTTGCCGTTGCTGACA...

XM_057909002.1
TCGCGACGGTATGTTTTGTTACTGTTTAAACAACTTTTTCTCGTTTGTACCTACTGTTATTCCTCTGATGCATTTTGATTTGTCAAATTCGGCTGAAGATGTAGTGATGATGGAGGTTTAGGTATTTCACTAGTGGCGATACATGGCGACATTTGGAGATATTGGGGTTGCGGCAGCATTTAATATTCTCAGTGCCTTGATTTTTCTTATAGCATTTGCCTTCCTAAGGCTTCAGCCATTTAATGATAGAGTATATTTTC...

CDS

3 records

下载 CDS FASTA

LOC130985844
ATGGCGACATTTGGAGATATTGGGGTTGCGGCAGCATTTAATATTCTCAGTGCCTTGATTTTTCTTATAGCATTTGCCTTCCTAAGGCTTCAGCCATTTAATGATAGAGTATATTTTCCGAAATGGTACCTCAAGGGATTGAGAAGCAGTCCCAGTCACTCAGGCGCGTACGTCACCAAATTCGTCAATTTAGACTGGAGATCATACATTAGATTTCTGAATTGGGTACCAGATGCATTGAAGATGCCTGAGCCGGAGCT...

Protein

3 records

下载 Protein FASTA

XP_057764984.1
MATFGDIGVAAAFNILSALIFLIAFAFLRLQPFNDRVYFPKWYLKGLRSSPSHSGAYVTKFVNLDWRSYIRFLNWVPDALKMPEPELIDHAGLDSAVYLRIYLLGLKIFVPVTLLAWAILVPVNWTNNTLAVLSQGDDKLTYSEIDKLSISNVPYGSPRFWTHVVMAYVFTFWTCYALMKEYEIIATMRLHFLASEKRRPDQFTVLVRNVPPDPDESVSECVEHFFLVNHPDHYLTHQVVINANKLAKLVEEKKKKQNWL...

XP_057764985.1
MATFGDIGVAAAFNILSALIFLIAFAFLRLQPFNDRVYFPKWYLKGLRSSPSHSGAYVTKFVNLDWRSYIRFLNWVPDALKMPEPELIDHAGLDSAVYLRIYLLGLKIFVPVTLLAWAILVPVNWTNNTLAVLSQGDDKLTYSEIDKLSISNVPYGSPRFWTHVVMAYVFTFWTCYALMKEYEIIATMRLHFLASEKRRPDQFTVLVRNVPPDPDESVSECVEHFFLVNHPDHYLTHQVVINANKLAKLVEEKKKKQNWL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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