当前解析结果
SmilChr05G001150| 统一新 Gene ID | SmilChr05G001150 |
|---|---|
| 名称 | SmilChr05G001150 |
| 描述 | mediator of RNA polymerase II transcription subunit 11 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 9669454 - 9670735 / - |
| NCBI Gene ID | LOC130985863 |
|---|---|
| GeneID | 130985863 |
| locus_tag | - |
| NCBI Name | LOC130985863 |
| 原始查询 | SmilChr05G001150 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | mediator of RNA polymerase II transcription subunit 11 |
| 产物 | mediator of RNA polymerase II transcription subunit 11 |
| Arabidopsis | AT3G01435 (AT3G01435)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:2745869] identity=75.4; qcov=0.622; evalue=4.73e-30; confidence=medium |
| Rice | Os02g0189100 (OsMED11_1)- identity=57.6; qcov=0.602; evalue=5.15e-18; confidence=low |
| GO | GO:0003712 (transcription coregulator activity); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0016592 (mediator complex) |
| KEGG | - |
| Pfam | PF10280 (Med11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985863 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057765010.1 |
| 2 | Nucleoplasm | 核质 | 1.00000 | XP_057765010.1 |
| 3 | Cytoplasm | 细胞质 | 1.00000 | XP_057765011.1 |
| 4 | Cytosol | 细胞质基质 | 0.80000 | XP_057765011.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057765010.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:9669886 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C9 |
Chr5:9669886 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr5:9669999 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A11,B125,B33,B68,C48 |
Chr5:9670024 |
AT |
A |
1bp_deletion | frameshift_variant | 259 | A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9 |
Chr5:9670028 |
G |
A |
EMS_canonical_SNV | stop_gained | 259 | A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9 |
Chr5:9670039 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B49,C32,C68 |
Chr5:9670172 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B72,C73 |
Chr5:9670264 |
ATT |
A |
2bp_deletion | frameshift_variant | 198 | A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A7,A9,B100,B101,B103,B104,B105,B109,B113,B114,B115,B117,B118,B119,B12,B120,B121,B125,B126,B128,B129,B13,B130,B131,B132,B133,B134,B135,B137,B138,B140,B15,B16,B17,B18,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B30,B31,B33,B34,B37,B40,B41,B42,B43,B45,B46,B47,B49,B5,B50,B51,B52,B53,B54,B55,B59,B6,B60,B61,B62,B63,B64,B65,B67,B68,B69,B7,B71,B72,B74,B75,B76,B77,B78,B80,B83,B84,B85,B86,B87,B88,B9,B90,B91,B92,B93,B95,B96,B98,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C22,C25,C26,C27,C28,C3,C30,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C47,C49,C5,C50,C51,C54,C55,C56,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C77,C78,C79,C8,C80,C81,C82,C83,C85,C86,C87,C9,D1,D10,D11,D3,D4,D5,D7,D8,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765010.1PF10280
Med11 8-108 aa
XP_057765011.1PF10280
Med11 8-70 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765010.1 |
Pfam | PF10280 |
Med11 | Family | 8 | 108 | 9.2e-19 | 68.8 | Mediator complex protein |
XP_057765011.1 |
Pfam | PF10280 |
Med11 | Family | 8 | 70 | 2.7e-10 | 41.5 | Mediator complex protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。