Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001152`

染色体: Chr05 坐标: 9676795-9679167 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001152`
名称	SmilChr05G001152
描述	phosphoribosylglycinamide formyltransferase, chloroplastic
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	9676795 - 9679167 / `+`

ID 对照

NCBI Gene ID	`LOC130985855`
GeneID	`130985855`
locus_tag	`-`
NCBI Name	`LOC130985855`
原始查询	`SmilChr05G001152`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphoribosylglycinamide formyltransferase, chloroplastic
产物	phosphoribosylglycinamide formyltransferase%2C chloroplastic
Arabidopsis	`AT1G31220` (AT1G31220) Formyl transferase [Source:NCBI gene (formerly Entrezgene);Acc:840010] identity=70.5; qcov=0.759; evalue=3.57e-112; confidence=high
Rice	`Os08g0500900` - identity=70.4; qcov=0.722; evalue=1.07e-110; confidence=high
GO	GO:0004644 (phosphoribosylglycinamide formyltransferase activity); GO:0005737 (cytoplasm); GO:0006189 ('de novo' IMP biosynthetic process); GO:0009507 (chloroplast)
KEGG	smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil00670 (One carbon pool by folate - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00551 (Formyl_trans_N)
InterPro	-
eggNOG	-
NR	GeneID:130985855

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057765002.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057765002.1`
3	Nucleus	细胞核	0.00000	`XP_057765002.1`
4	Chromosome	染色体	0.00000	`XP_057765002.1`
5	Centromere	着丝粒	0.00000	`XP_057765002.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:9676921`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B105,B38,B39
`Chr5:9676923`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B111,B55
`Chr5:9677166`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr5:9677260`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr5:9678510`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B80,B82,C25,C82
`Chr5:9678586`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B119,B14,C38,D4
`Chr5:9678607`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,C33,C42
`Chr5:9678832`	`CGG`	`C`	2bp_deletion	frameshift_variant	38	A3,A6,B106,B108,B110,B114,B118,B13,B132,B20,B23,B25,B28,B29,B37,B4,B40,B51,B68,B70,B88,B94,B95,B96,B99,C25,C35,C59,C61,C64,C71,C74,C76,C8,C80,C82,C83,D7
`Chr5:9678835`	`A`	`ACT`	2bp_insertion	frameshift_variant	30	A6,B108,B110,B114,B118,B13,B132,B20,B23,B28,B29,B37,B4,B40,B51,B68,B70,B88,B94,B96,B99,C25,C35,C61,C71,C74,C76,C8,C82,D7
`Chr5:9678852`	`TGA`	`T`	2bp_deletion	frameshift_variant	5	B118,B29,B68,B96,C74
`Chr5:9678852`	`TGA`	`T`	2bp_deletion	CDS_variant	5	B118,B29,B68,B96,C74
`Chr5:9678861`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A11,A3,B28

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765002.1

299 aa

150

299

Formyl_trans_N

PF00551 Formyl_trans_N 89-270 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765002.1`	Pfam	`PF00551`	Formyl_trans_N	Domain	89	270	3.5e-54	184.0	Formyl transferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057909019.1
AGAACACCCAGCTTCGCCCTGTTTTCAAAAGCATAAACCCCACTATTGAGCTCCAAACCCCTGTTTCATCTGTAGCCAGCTTTTCGGCCTATTTCAATTTTCATGGAAGTCCAAAATGCAATTCTTCGCGGTTGTAATCATGGAGCGGTCTCTTCCATTCGAACCAGCAAAACTCATGTATTCACAAAGTTGCCCAAATCATTTTCGTCCCAAACCGCCTCTTCTAGTTCTAATGGGGTTTCTCTTAAAAATCATCTTCC...

CDS

1 records

下载 CDS FASTA

LOC130985855
ATGGAAGTCCAAAATGCAATTCTTCGCGGTTGTAATCATGGAGCGGTCTCTTCCATTCGAACCAGCAAAACTCATGTATTCACAAAGTTGCCCAAATCATTTTCGTCCCAAACCGCCTCTTCTAGTTCTAATGGGGTTTCTCTTAAAAATCATCTTCCTTCTCAAATCAAGAGAAATTTTCGGTGTAGCTATAGCATCCAGAATGTTGAATGTAAAGCGGTTTCTGATGCAGAAGAAGATACGCCCAAAGCTAAAATTAG...

Protein

1 records

下载 Protein FASTA

XP_057765002.1
MEVQNAILRGCNHGAVSSIRTSKTHVFTKLPKSFSSQTASSSSNGVSLKNHLPSQIKRNFRCSYSIQNVECKAVSDAEEDTPKAKIRRKNLAVFVSGGGSNFRSIYEATLKGSVHGDVVALVTNKHDCGGAEYARDKGIPVIVFPQREEVLSAEDLVILLRSYKVDLVLLAGYLKLIPAELIKCYPKAILNIHPSLLPAFGGKGYYGMKVHRAVIASGARYSGPTIHYVDEQYDTGSILAQRAVPVLAKDTAEELAARVL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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