Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001166`

染色体: Chr05 坐标: 9788556-9791052 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001166`
名称	SmilChr05G001166
描述	uncharacterized SmilChr05G001166
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	9788556 - 9791052 / `+`

ID 对照

NCBI Gene ID	`LOC130985849`
GeneID	`130985849`
locus_tag	`-`
NCBI Name	`LOC130985849`
原始查询	`SmilChr05G001166`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os09g0122100; species=rice; confidence=medium
产物	hit=Os09g0122100; species=rice; confidence=medium
Arabidopsis	`AT5G41980` (AT5G41980) nuclease [Source:NCBI gene (formerly Entrezgene);Acc:834203] identity=33.9; qcov=0.892; evalue=1.24e-59; confidence=low
Rice	`Os09g0122100` - identity=41.9; qcov=0.838; evalue=1.72e-80; confidence=medium
GO	-
KEGG	-
Pfam	PF01609 (DDE_Tnp_1); PF04827 (Plant_tran); PF13359 (DDE_Tnp_4); PF26138 (DUF8040)
InterPro	-
eggNOG	-
NR	GeneID:130985849

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057764994.1`
2	Chromosome	染色体	0.40000	`XP_057764994.1`
3	Telomere	端粒	0.20000	`XP_057764994.1`
4	Centromere	着丝粒	0.00000	`XP_057764994.1`
5	Chromatin	染色质	0.00000	`XP_057764994.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:9789565`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr5:9789615`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr5:9789640`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr5:9789752`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:9789759`	`GT`	`G`	1bp_deletion	frameshift_variant	1	D10
`Chr5:9789759`	`GT`	`G`	1bp_deletion	CDS_variant	1	D10
`Chr5:9789769`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C15,C21
`Chr5:9789782`	`C`	`T`	EMS_canonical_SNV	stop_gained	11	A10,A15,B120,B38,B39,B4,B63,B73,C49,C7,C76
`Chr5:9789834`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B117,B46,C85
`Chr5:9789873`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr5:9789900`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr5:9789915`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C15,C21,C83

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764994.1

407 aa

204

407

DUF8040

Plant_tran

DDE_Tnp_1

DDE_Tnp_4

PF26138 DUF8040 70-154 aa PF04827 Plant_tran 176-348 aa PF01609 DDE_Tnp_1 178-345 aa PF13359 DDE_Tnp_4 185-346 aa

XP_057764995.1

407 aa

204

407

DUF8040

Plant_tran

DDE_Tnp_1

DDE_Tnp_4

PF26138 DUF8040 70-154 aa PF04827 Plant_tran 176-348 aa PF01609 DDE_Tnp_1 178-345 aa PF13359 DDE_Tnp_4 185-346 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764994.1`	Pfam	`PF26138`	DUF8040	Domain	70	154	4.1e-23	81.8	Domain of unknown function (DUF8040)
`XP_057764994.1`	Pfam	`PF04827`	Plant_tran	Family	176	348	6.6e-06	26.6	Plant transposon protein
`XP_057764994.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	178	345	1.8e-10	41.7	Transposase DDE domain
`XP_057764994.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	185	346	8.8e-25	87.9	DDE superfamily endonuclease
`XP_057764995.1`	Pfam	`PF26138`	DUF8040	Domain	70	154	4.1e-23	81.8	Domain of unknown function (DUF8040)
`XP_057764995.1`	Pfam	`PF04827`	Plant_tran	Family	176	348	6.6e-06	26.6	Plant transposon protein
`XP_057764995.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	178	345	1.8e-10	41.7	Transposase DDE domain
`XP_057764995.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	185	346	8.8e-25	87.9	DDE superfamily endonuclease

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909011.1
AATGCTACAGTGATCCATTTTATTTTTCCCGATGTCCATTTTGCCCCTGAAATTATTTCAAAACTTGTATTTCTGATTGGCCAACTATTTCTTCATTTCCACATATCTTTTCACTTCGCCAGAATTTTCTTCTGATCCGGCATTGAAGGTTCGTTTCGATTCTAGATCTGAAGCCGGTTCTTGACATCAGGCTGATTTGCAGCACAGAGTGCTGGAAGAAGGTTATACGTCAGGGCCTGGTGCTTGTGAGCAGTCCAATA...

XM_057909012.1
AATGCTACAGTGATCCATTTTATTTTTCCCGATGTCCATTTTGCCCCTGAAATTATTTCAAAACTTGTATTTCTGATTGGCCAACTATTTCTTCATTTCCACATATCTTTTCACTTCGCCAGAATTTTCTTCTGATCCGGCATTGAAGGTTCGTTTCGATTCTAGATCTGAAGCCGGTTCTTGACATCAGGCTGATTTGCAGCACAGAGTGCTGGAAGAAGGTTATACGTCAGGGCCTGGTGCTTGTGAGTCCAATATAC...

CDS

2 records

下载 CDS FASTA

LOC130985849
ATGGAACGGAATAGGCCTAAAAGATGCCATATGAATGTATATGTATATGCGATGCTTGAGGAAATAATGGAACAGCTTGTTGAGCAACTTATCGTAGTAATTGAACACATAGTCAGGCTTATAACAAGAAAAAGAAAGCGTAGCTCAACGGTAGCGCCGTATGGTATTCTTCACCGGATCCCTGAGCAGGTGAAGCATTTGAGCAGGTTAACTAATATTAGTGATATTGATTGTGTTGTAAATATGCGAATGGATCGCAA...

Protein

2 records

下载 Protein FASTA

XP_057764994.1
MERNRPKRCHMNVYVYAMLEEIMEQLVEQLIVVIEHIVRLITRKRKRSSTVAPYGILHRIPEQVKHLSRLTNISDIDCVVNMRMDRNAFGRLCQLLRQLGGLTNGRYVTVEEQVAVFLSVLAHHKKNRVVRFDFWRSGQTISHYVHVVLNAILKLHVILLVKPQPVLEDCIDPRWRWFKGCLGALDGTYIDVMVPSANKPRYRTRKGQISTNTLAVCDRNGKFVYVLPGWEGSAADSRVLRDALTRVHGFRVPKRNYYLC...

XP_057764995.1
MERNRPKRCHMNVYVYAMLEEIMEQLVEQLIVVIEHIVRLITRKRKRSSTVAPYGILHRIPEQVKHLSRLTNISDIDCVVNMRMDRNAFGRLCQLLRQLGGLTNGRYVTVEEQVAVFLSVLAHHKKNRVVRFDFWRSGQTISHYVHVVLNAILKLHVILLVKPQPVLEDCIDPRWRWFKGCLGALDGTYIDVMVPSANKPRYRTRKGQISTNTLAVCDRNGKFVYVLPGWEGSAADSRVLRDALTRVHGFRVPKRNYYLC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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