Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001176`

染色体: Chr05 坐标: 9854622-9858250 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001176`
名称	SmilChr05G001176
描述	transcription termination factor MTERF6, chloroplastic/mitochondrial
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	9854622 - 9858250 / `+`

ID 对照

NCBI Gene ID	`LOC130985873`
GeneID	`130985873`
locus_tag	`-`
NCBI Name	`LOC130985873`
原始查询	`SmilChr05G001176`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription termination factor MTERF6, chloroplastic/mitochondrial
产物	transcription termination factor MTERF6%2C chloroplastic/mitochondrial
Arabidopsis	`AT1G78930` (AT1G78930) Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:844232] identity=56.2; qcov=0.97; evalue=2.71e-161; confidence=high
Rice	`Os09g0560100` - identity=52; qcov=0.978; evalue=5.52e-149; confidence=high
GO	GO:0003690 (double-stranded DNA binding); GO:0006355 (regulation of DNA-templated transcription)
KEGG	-
Pfam	PF02536 (mTERF)
InterPro	-
eggNOG	-
NR	GeneID:130985873

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057765018.1`
2	Chloroplast stroma	叶绿体基质	0.60000	`XP_057765018.1`
3	Mitochondrion	线粒体	0.40000	`XP_057765019.1`
4	Nucleus	细胞核	0.00000	`XP_057765018.1`
5	Chromosome	染色体	0.00000	`XP_057765018.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:9854781`	`CG`	`C`	1bp_deletion	frameshift_variant	3	A13,A21,B122
`Chr5:9854781`	`CG`	`C`	1bp_deletion	CDS_variant	3	A13,A21,B122
`Chr5:9854822`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A13,B122
`Chr5:9854859`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B134,B49,C44,C45,D7
`Chr5:9855010`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C73
`Chr5:9855051`	`C`	`T`	EMS_canonical_SNV	stop_gained	40	A15,A4,A9,B1,B105,B122,B123,B127,B137,B14,B16,B19,B24,B32,B37,B51,B71,B78,B82,B9,B97,B99,C19,C25,C27,C30,C31,C32,C34,C35,C36,C43,C45,C46,C61,C64,C68,C74,C86,D5
`Chr5:9855076`	`CA`	`C`	1bp_deletion	frameshift_variant	5	B111,B2,B92,C34,D11
`Chr5:9855076`	`CA`	`C`	1bp_deletion	CDS_variant	5	B111,B2,B92,C34,D11
`Chr5:9855114`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B124,C17
`Chr5:9855155`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C73,D6
`Chr5:9855336`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr5:9855338`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B132

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765018.1

606 aa

303

606

mTERF

PF02536 mTERF 287-592 aa

XP_057765019.1

405 aa

202

405

mTERF

PF02536 mTERF 86-391 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765018.1`	Pfam	`PF02536`	mTERF	Family	287	592	4e-103	345.4	mTERF
`XP_057765019.1`	Pfam	`PF02536`	mTERF	Family	86	391	1.9e-101	339.9	mTERF

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909035.1
TAAATATTTCAGCCCATTATATGCCATAGAAAAAGAAGCCCAAATAATTCTTCTGTGAGACGGCGTCGTTTCGCCCGTTTCCACTAGCACTTACACACTGTTTCAGGAGCATGATATGATTACGAGCTCAACGCCATGGCGGCGCCGCCACTCCTCCACCGACATTTCTCCTCTTCTCGCTCCACTCCCTTCCCGTGCAGGCGGCCCCATGCTCTTGAACCAAATTTCTTAATCTCACCAAAACCTAGCAAAACATCCAT...

XM_057909036.1
TAAATATTTCAGCCCATTATATGCCATAGAAAAAGAAGCCCAAATAATTCTTCTGTGAGACGGCGTCGTTTCGCCCGTTTCCACTAGCACTTACACACTGTTTCAGGAGCATGATATGATTACGAGCTCAACGCCATGGCGGCGCCGCCACTCCTCCACCGACATTTCTCCTCTTCTCGCTCCACTCCCTTCCCGTGCAGGCGGCCCCATGCTCTTGAACCAAATTTCTTAATCTCACCAAAACCTAGCAAAACATCCAT...

CDS

2 records

下载 CDS FASTA

LOC130985873
ATGGCGGCGCCGCCACTCCTCCACCGACATTTCTCCTCTTCTCGCTCCACTCCCTTCCCGTGCAGGCGGCCCCATGCTCTTGAACCAAATTTCTTAATCTCACCAAAACCTAGCAAAACATCCATATCCGTTTCCTTCCCCCCTCACTCAATCTCTCTCCAAAACGAGCGCAGAAAGCCCAGGGGCTTTGCCTCCGCCTCACAGGAAAACGATTCCGATCTAGAAACCAACGAAAATCGCGTCGGAGAAGCGCGGAAAGC...

LOC130985873
ATGCGCTTCCTCGCCTCATTCACAAGTGATGATGGTGAGCTCATTGGGAAAAATGCGCGGCGAATGATGGCGCATCTCTCTATTTCTGTTGATGAGGATTTGCAGCAAACTTTAGCATTTTTTGAAAAGATTCAAGCGAGGCGTGGGGGTTTGAATCTTTTGGGTTCGGAGAGTACTTCTTTCCGGTATCTCATTGAATCTTTTCCCCGCCTTCTCGTCCTGCCTCTAGAATCTTGTGTGAAGCCAATCGTGTTGTTTTT...

Protein

2 records

下载 Protein FASTA

XP_057765018.1
MAAPPLLHRHFSSSRSTPFPCRRPHALEPNFLISPKPSKTSISVSFPPHSISLQNERRKPRGFASASQENDSDLETNENRVGEARKAIIEYLEKFGASREDALCISSNCPNYLNTLIDGVDDLDDWNSLAATAASPGTKSDGGAVEFRKKVSQMAEQKGDKGVLPFLDSIGLSLSSASRLARYLSSSKSNALPRLIHKVKYMKEILFSGSDDGELIGKNARRMMAHLSISVDEDLQQTLAFFEKIQARRGGLNLLGSEST...

XP_057765019.1
MRFLASFTSDDGELIGKNARRMMAHLSISVDEDLQQTLAFFEKIQARRGGLNLLGSESTSFRYLIESFPRLLVLPLESCVKPIVLFFEVIEVPKGCIRNILLLFPPVLTYDIDKDIKPRLRSFEKIGVKGNDLGKMLVKYPWILSASILENFEKILDFFDEEKVPRMCSSRAIKKWPHILGCSVNKLKLIVEEFNEIDIKSKKLGHVIATSPQLLLRKPQDFLQVVSFFKDLGMDEDAIARMLSRCPEIFAASIDKTLEK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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