当前解析结果
SmilChr05G001200| 统一新 Gene ID | SmilChr05G001200 |
|---|---|
| 名称 | SmilChr05G001200 |
| 描述 | pentatricopeptide repeat-containing protein At4g16470 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 10090442 - 10092722 / + |
| NCBI Gene ID | LOC130985896 |
|---|---|
| GeneID | 130985896 |
| locus_tag | - |
| NCBI Name | LOC130985896 |
| 原始查询 | SmilChr05G001200 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At4g16470 |
| 产物 | pentatricopeptide repeat-containing protein At4g16470 |
| Arabidopsis | AT4G16470 (AT4G16470)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827345] identity=58; qcov=0.79; evalue=0; confidence=high |
| Rice | Os06g0625800- identity=47.2; qcov=0.737; evalue=7.44e-126; confidence=high |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF20431 (E_motif) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985896 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.80000 | XP_057765048.1 |
| 2 | Chloroplast | 叶绿体 | 0.40000 | XP_057765048.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057765048.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057765048.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057765048.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:10090463 |
CT |
C |
1bp_deletion | frameshift_variant | 3 | B110,B134,C82 |
Chr5:10090463 |
CT |
C |
1bp_deletion | CDS_variant | 3 | B110,B134,C82 |
Chr5:10090484 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
Chr5:10090574 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B119,B14 |
Chr5:10090620 |
AG |
A |
1bp_deletion | frameshift_variant | 6 | B14,B72,B99,C4,C46,C87 |
Chr5:10090662 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C68 |
Chr5:10090696 |
C |
CT |
1bp_insertion | frameshift_variant | 3 | A13,B111,B55 |
Chr5:10090696 |
C |
CT |
1bp_insertion | CDS_variant | 3 | A13,B111,B55 |
Chr5:10090715 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A13,B111,B55 |
Chr5:10090990 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr5:10091006 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr5:10091296 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A24,B108,B37,C42 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765048.1PF13041
PPR_2 218-264 aa
PF01535
PPR 219-248 aa
PF13812
PPR_3 317-364 aa
PF13041
PPR_2 317-365 aa
PF01535
PPR 320-350 aa
PF01535
PPR 355-382 aa
PF20431
E_motif 435-497 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765048.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 218 | 264 | 1.7e-27 | 96.0 | PPR repeat family |
XP_057765048.1 |
Pfam | PF01535 |
PPR | Repeat | 219 | 248 | 2.3e-27 | 94.0 | PPR repeat |
XP_057765048.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 317 | 364 | 1.9e-09 | 38.2 | Pentatricopeptide repeat domain |
XP_057765048.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 317 | 365 | 1.7e-27 | 96.0 | PPR repeat family |
XP_057765048.1 |
Pfam | PF01535 |
PPR | Repeat | 320 | 350 | 2.3e-27 | 94.0 | PPR repeat |
XP_057765048.1 |
Pfam | PF01535 |
PPR | Repeat | 355 | 382 | 2.3e-27 | 94.0 | PPR repeat |
XP_057765048.1 |
Pfam | PF20431 |
E_motif | Repeat | 435 | 497 | 4.1e-19 | 69.3 | E motif |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。