当前解析结果
SmilChr05G001221| 统一新 Gene ID | SmilChr05G001221 |
|---|---|
| 名称 | SmilChr05G001221 |
| 描述 | microtubule-associated protein 70-5 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 10249173 - 10254623 / + |
| NCBI Gene ID | LOC130985918 |
|---|---|
| GeneID | 130985918 |
| locus_tag | - |
| NCBI Name | LOC130985918 |
| 原始查询 | SmilChr05G001221 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | microtubule-associated protein 70-5 |
| 产物 | microtubule-associated protein 70-5 |
| Arabidopsis | AT4G17220 (MAP70-5)microtubule-associated proteins 70-5 [Source:NCBI gene (formerly Entrezgene);Acc:827434] identity=57.1; qcov=0.956; evalue=0; confidence=high |
| Rice | Os02g0736100 (MAP70.2)- identity=51.1; qcov=0.986; evalue=3.22e-164; confidence=high |
| GO | GO:0007010 (cytoskeleton organization); GO:0008017 (microtubule binding) |
| KEGG | - |
| Pfam | PF07058 (MAP70) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985918 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057765079.1 |
| 2 | Spindle | Spindle | 1.00000 | XP_057765079.1 |
| 3 | Centrosome | 中心体 | 0.60000 | XP_057765079.1 |
| 4 | Spindle pole | Spindle pole | 0.60000 | XP_057765079.1 |
| 5 | Centriole | Centriole | 0.20000 | XP_057765079.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:10250277 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B21,B23 |
Chr5:10251644 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D9 |
Chr5:10252077 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr5:10252911 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,A16,A3 |
Chr5:10253121 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr5:10253642 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B21,B23 |
Chr5:10253686 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr5:10253825 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C35,C85,D9 |
Chr5:10253913 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B4,B54 |
Chr5:10253927 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B21,B23,D11 |
Chr5:10254050 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057765079.1PF07058
MAP70 12-563 aa
XP_057765080.1PF07058
MAP70 12-563 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765079.1 |
Pfam | PF07058 |
MAP70 | Family | 12 | 563 | 6.9e-208 | 692.6 | Microtubule-associated protein 70 |
XP_057765080.1 |
Pfam | PF07058 |
MAP70 | Family | 12 | 563 | 6.9e-208 | 692.6 | Microtubule-associated protein 70 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。