Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G001221

染色体: Chr05 坐标: 10249173-10254623 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G001221
名称SmilChr05G001221
描述microtubule-associated protein 70-5
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向10249173 - 10254623 / +

ID 对照

NCBI Gene IDLOC130985918
GeneID130985918
locus_tag-
NCBI NameLOC130985918
原始查询SmilChr05G001221

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述microtubule-associated protein 70-5
产物microtubule-associated protein 70-5
ArabidopsisAT4G17220 (MAP70-5)
microtubule-associated proteins 70-5 [Source:NCBI gene (formerly Entrezgene);Acc:827434]
identity=57.1; qcov=0.956; evalue=0; confidence=high
RiceOs02g0736100 (MAP70.2)
-
identity=51.1; qcov=0.986; evalue=3.22e-164; confidence=high
GOGO:0007010 (cytoskeleton organization); GO:0008017 (microtubule binding)
KEGG-
PfamPF07058 (MAP70)
InterPro-
eggNOG-
NRGeneID:130985918

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoskeleton 细胞骨架 1.00000 XP_057765079.1
2 Spindle Spindle 1.00000 XP_057765079.1
3 Centrosome 中心体 0.60000 XP_057765079.1
4 Spindle pole Spindle pole 0.60000 XP_057765079.1
5 Centriole Centriole 0.20000 XP_057765079.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:10250277 G A EMS_canonical_SNV CDS_variant 2 B21,B23
Chr5:10251644 G A EMS_canonical_SNV CDS_variant 1 D9
Chr5:10252077 C T EMS_canonical_SNV CDS_variant 1 C35
Chr5:10252911 G A EMS_canonical_SNV CDS_variant 3 A1,A16,A3
Chr5:10253121 G A EMS_canonical_SNV CDS_variant 1 B13
Chr5:10253642 C T EMS_canonical_SNV CDS_variant 2 B21,B23
Chr5:10253686 C T EMS_canonical_SNV CDS_variant 1 B55
Chr5:10253825 C T EMS_canonical_SNV CDS_variant 3 C35,C85,D9
Chr5:10253913 G A EMS_canonical_SNV CDS_variant 2 B4,B54
Chr5:10253927 G A EMS_canonical_SNV CDS_variant 3 B21,B23,D11
Chr5:10254050 C T EMS_canonical_SNV CDS_variant 1 B65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057765079.1
564 aa
N
1
282
564
MAP70
C
PF07058 MAP70 12-563 aa
XP_057765080.1
564 aa
N
1
282
564
MAP70
C
PF07058 MAP70 12-563 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057765079.1 Pfam PF07058 MAP70 Family 12 563 6.9e-208 692.6 Microtubule-associated protein 70
XP_057765080.1 Pfam PF07058 MAP70 Family 12 563 6.9e-208 692.6 Microtubule-associated protein 70

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057909097.1
CCACTATCTTTGTCTACTTCTCTATTTATTAAGATTGGATTATCATACTACATTGGTGTAGGTAGAGATGTTATCTTCCCTTTGTCGCCTCACCAAAAACCACTGTTTTTGCCTTAACAATTAATTGCCATATGGCAAGTGTCCTCCACCTGTTTGATTGGATTCCTCTTAAATTTCTACATACTTCCAAGCAAAGATCATCATGATCTTGTGCTAAAGTTTAATACTTTTAAGCCACCTCAAATATAGGGGCTTTATGG...
XM_057909096.1
AGGTAGAGATGTTATCTTCCCTTTGTCGCCTCACCAAAAACCACTGTTTTTGCCTTAACAATTAATTGCCATATGGCAAGTGTCCTCCACCTGTTTGATTGGATTCCTCTTAAATTTCTACATACTTCCAAGCAAAGATCATCATGATCTTGTGCTAAAGTTTAATACTTTTAAGCCACCTCAAATATAGGGGCTTTATGGTACTAATCCAAAGTTGAATGAATGAGTTGCCACTAAGAACTTAATCAGCATTTTAGGAG...

CDS

2 records

下载 CDS FASTA
LOC130985918
ATGGCAGGCATCCAAGTATTCGGCGGTGAAGATGTTTCCCTTCTTTCTCATACGGACCCTGTTGTCTTAGAGCTCAACAGATTGCAGAATCAACTCAAAGAGAAGGAGAGGGGACTGGGGAAAGCTCAAAGTGAAATTCGAGCACTGAGAGCAACTGAAGCGCTGAAGGATAAGGCTTTGGAGGAGCTTGGAAGTGAAGTCAAAAGGTTGGAAGAGAAGCTAAGATTGAATGGAAACCATCTTGAGCAGAAGAATATTGA...
LOC130985918
ATGGCAGGCATCCAAGTATTCGGCGGTGAAGATGTTTCCCTTCTTTCTCATACGGACCCTGTTGTCTTAGAGCTCAACAGATTGCAGAATCAACTCAAAGAGAAGGAGAGGGGACTGGGGAAAGCTCAAAGTGAAATTCGAGCACTGAGAGCAACTGAAGCGCTGAAGGATAAGGCTTTGGAGGAGCTTGGAAGTGAAGTCAAAAGGTTGGAAGAGAAGCTAAGATTGAATGGAAACCATCTTGAGCAGAAGAATATTGA...

Protein

2 records

下载 Protein FASTA
XP_057765079.1
MAGIQVFGGEDVSLLSHTDPVVLELNRLQNQLKEKERGLGKAQSEIRALRATEALKDKALEELGSEVKRLEEKLRLNGNHLEQKNIDIKKLTDEKKEALAAQYAAEATLRRVYANQKDDDSIPIELIIAPLEAEMKMHKNELAALQEDKRALERLTKSKEAALLEAEKILRSALERALIVEEVQNQNYELRRQIEICQEENKILDKTHRYKVLEVEKLSQTIRELEEAILAGGAAANTIRDYKRQISELNDEKRTLEREL...
XP_057765080.1
MAGIQVFGGEDVSLLSHTDPVVLELNRLQNQLKEKERGLGKAQSEIRALRATEALKDKALEELGSEVKRLEEKLRLNGNHLEQKNIDIKKLTDEKKEALAAQYAAEATLRRVYANQKDDDSIPIELIIAPLEAEMKMHKNELAALQEDKRALERLTKSKEAALLEAEKILRSALERALIVEEVQNQNYELRRQIEICQEENKILDKTHRYKVLEVEKLSQTIRELEEAILAGGAAANTIRDYKRQISELNDEKRTLEREL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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